[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6147	8129974	NM_032020	FUCA2		fucosidase, alpha-L- 2, plasma

Fetching correlation data, please wait...
Getting list of correlations for id 6147.
Getting list of p-values for id 6147.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.127 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8129974	8138805	NM_019029	CPVL	0.736166	3.644025e-19	6.314002e-15	6.314002e-15
2	8129974	8114225	NM_004893	H2AFY	0.712717	1.497510e-17	2.594735e-13	1.297368e-13
3	8129974	7977786	NM_003982	SLC7A7	0.709148	2.552713e-17	4.423085e-13	1.474362e-13
4	8129974	8076403	NM_000262	NAGA	0.703687	5.684996e-17	9.850392e-13	2.462598e-13
5	8129974	8140814	NM_018843	SLC25A40	0.690921	3.447886e-16	5.974151e-12	1.194830e-12
6	8129974	7960794	NM_004244	CD163	0.690282	3.764486e-16	6.522724e-12	1.087121e-12
7	8129974	8116734	NM_004271	LY86	0.689375	4.261940e-16	7.384664e-12	1.054952e-12
8	8129974	8077450	NM_018184	ARL8B	0.684759	7.964137e-16	1.379946e-11	1.724933e-12
9	8129974	7985134	NM_005530	IDH3A	0.683956	8.868632e-16	1.536668e-11	1.707409e-12
10	8129974	7969830	NM_007129	ZIC2	-0.680692	1.368633e-15	2.371431e-11	2.371431e-12
11	8129974	8102619	NM_001154	ANXA5	0.679491	1.603204e-15	2.777872e-11	2.525338e-12
12	8129974	8082035	NM_175862	CD86	0.676228	2.455164e-15	4.254063e-11	3.545052e-12
13	8129974	8040142	NM_016207	CPSF3	0.674956	2.894667e-15	5.015589e-11	3.858145e-12
14	8129974	7948455	NM_152852	MS4A6A	0.671899	4.285443e-15	7.425387e-11	5.303848e-12
15	8129974	8074237	NM_017424	CECR1	0.671375	4.581382e-15	7.938161e-11	5.292107e-12
16	8129974	8041015	NM_018158	SLC4A1AP	0.671247	4.656581e-15	8.068458e-11	5.042786e-12
17	8129974	8132943	NM_001762	CCT6A	0.670402	5.184144e-15	8.982566e-11	5.283863e-12
18	8129974	8137232	NM_175571	GIMAP8	0.670017	5.443468e-15	9.431897e-11	5.239943e-12
19	8129974	8066117	NM_015474	SAMHD1	0.669409	5.878682e-15	1.018599e-10	5.361048e-12
20	8129974	8023481	NM_004539	NARS	0.668511	6.583750e-15	1.140766e-10	5.703832e-12
21	8129974	7993185	NM_002484	NUBP1	0.667725	7.267464e-15	1.259234e-10	5.996350e-12
22	8129974	8168691	NM_006729	DIAPH2	0.666947	8.012777e-15	1.388374e-10	6.310791e-12
23	8129974	8014233	NM_001104587	SLFN11	0.665865	9.172435e-15	1.589308e-10	6.910034e-12
24	8129974	7964701	NM_002076	GNS	0.665129	1.005139e-14	1.741605e-10	7.256687e-12
25	8129974	7980146	NM_006432	NPC2	0.664049	1.149293e-14	1.991379e-10	7.965516e-12
26	8129974	8084092	NM_002492	NDUFB5	0.663710	1.198566e-14	2.076755e-10	7.987521e-12
27	8129974	7917912	NM_000110	DPYD	0.661248	1.622649e-14	2.811565e-10	1.041320e-11
28	8129974	8108015	NM_002154	HSPA4	0.660770	1.720279e-14	2.980727e-10	1.064545e-11
29	8129974	8163275	NM_001080398	KIAA0368	0.659685	1.963841e-14	3.402748e-10	1.173361e-11
30	8129974	7957106	NM_014515	CNOT2	0.657500	2.559611e-14	4.435038e-10	1.478346e-11
31	8129974	8015490	NM_003315	DNAJC7	0.656852	2.767832e-14	4.795823e-10	1.547040e-11
32	8129974	7997230	NM_002811	PSMD7	0.656071	3.040236e-14	5.267817e-10	1.646193e-11
33	8129974	8072015	NM_005160	ADRBK2	0.655683	3.185377e-14	5.519303e-10	1.672516e-11
34	8129974	8089527	NM_022488	ATG3	0.655601	3.216476e-14	5.573187e-10	1.639173e-11
35	8129974	7947027	NM_001040697	UEVLD	0.655459	3.271705e-14	5.668883e-10	1.619681e-11
36	8129974	8052269	NM_001135597	CCDC88A	0.655150	3.395236e-14	5.882925e-10	1.634146e-11
37	8129974	8107532	NM_000414	HSD17B4	0.655097	3.416900e-14	5.920462e-10	1.600125e-11
38	8129974	7970681	NM_005977	RNF6	0.654941	3.481258e-14	6.031976e-10	1.587362e-11
39	8129974	8058552	NM_005896	IDH1	0.654062	3.866515e-14	6.699511e-10	1.717823e-11
40	8129974	8017421	NM_020198	CCDC47	0.653962	3.912927e-14	6.779929e-10	1.694982e-11
41	8129974	8046726	NM_001130445	SSFA2	0.653064	4.353773e-14	7.543783e-10	1.839947e-11
42	8129974	8113623	NM_021649	TICAM2	0.652906	4.436368e-14	7.686895e-10	1.830213e-11
43	8129974	8008646	NM_021626	SCPEP1	0.651360	5.326926e-14	9.229964e-10	2.146503e-11
44	8129974	7931873	NM_001494	GDI2	0.650736	5.733534e-14	9.934495e-10	2.257840e-11
45	8129974	7940153	NM_022074	FAM111A	0.650696	5.760702e-14	9.981569e-10	2.218126e-11
46	8129974	7951397	NM_033292	CASP1	0.649853	6.360455e-14	1.102076e-9	2.395818e-11
47	8129974	8146243	NM_032410	HOOK3	0.648726	7.257991e-14	1.257592e-9	2.675728e-11
48	8129974	8006638	NM_024835	GGNBP2	0.648674	7.302048e-14	1.265226e-9	2.635887e-11
49	8129974	8092328	NM_020166	MCCC1	0.648446	7.498787e-14	1.299315e-9	2.651663e-11
50	8129974	7985166	NM_004136	IREB2	0.647654	8.224333e-14	1.425030e-9	2.850060e-11

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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