Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6475	8101013	NM_015436	RCHY1		ring finger and CHY zinc finger domain containing 1

Column legend:

• Rank: Row number sorted by strongest correlation
• Label1: Affymetrix probe set identifier(s) of the gene used in the search
• Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
• AccNum: The unique identifier for a sequence record [accessible at NCBI]
• GeneSym: Official gene symbol
• Info: Link to more information about the variable in the given row
• Pearson r: Pearson correlation coefficient
• Raw p: Unadjusted p-value
• Bonferroni: Bonferroni corrected p-value
• FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Info	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8101013	7935320	NM_020123	TM9SF3		0.901901	2.439243e-39	4.226477e-35	4.226477e-35
2	8101013	8127943	NM_153816	SNX14		0.900164	5.757494e-39	9.976009e-35	4.988005e-35
3	8101013	7975113	NM_145165	CHURC1		0.893189	1.554599e-37	2.693654e-33	8.978848e-34
4	8101013	8070341	NM_033656	BRWD1		0.890514	5.182092e-37	8.979010e-33	2.244753e-33
5	8101013	7932678	NM_139312	YME1L1		0.887912	1.623246e-36	2.812598e-32	5.625197e-33
6	8101013	8045697	NM_018151	RIF1		0.887362	2.058429e-36	3.566640e-32	5.944400e-33
7	8101013	8052307	NM_001122964	SMEK2		0.887104	2.300103e-36	3.985388e-32	5.693412e-33
8	8101013	7908421	NM_004600	TROVE2		0.886906	2.504289e-36	4.339182e-32	5.423977e-33
9	8101013	8173713	NM_032121	MAGT1		0.886879	2.534003e-36	4.390666e-32	4.878518e-33
10	8101013	8039933	NM_017761	PNRC2		0.885245	5.080850e-36	8.803589e-32	8.803589e-33
11	8101013	7898910	NM_017761	PNRC2		0.885245	5.080850e-36	8.803589e-32	8.003263e-33
12	8101013	7903281	NM_012243	SLC35A3		0.883964	8.703621e-36	1.508076e-31	1.256730e-32
13	8101013	8042601	NM_014497	ZNF638		0.883141	1.225528e-35	2.123472e-31	1.633440e-32
14	8101013	8083183	NM_001080415	SR140		0.883041	1.277400e-35	2.213351e-31	1.580965e-32
15	8101013	8017235	NM_006380	APPBP2		0.880615	3.449982e-35	5.977784e-31	3.985189e-32
16	8101013	8050565	NM_015317	PUM2		0.880375	3.801978e-35	6.587687e-31	4.117305e-32
17	8101013	7989885	NM_001031723	DNAJB14		0.880203	4.075068e-35	7.060871e-31	4.153453e-32
18	8101013	7933115	NR_027269	SEPT7L		0.880155	4.155867e-35	7.200871e-31	4.000484e-32
19	8101013	8045381	NM_058241	CCNT2		0.879184	6.136589e-35	1.063287e-30	5.596246e-32
20	8101013	7917120	NM_015017	USP33		0.879136	6.255636e-35	1.083914e-30	5.419570e-32
21	8101013	7933047	NM_003591	CUL2		0.878758	7.275153e-35	1.260566e-30	6.002694e-32
22	8101013	8115022	NM_001025105	CSNK1A1		0.877666	1.121709e-34	1.943585e-30	8.834478e-32
23	8101013	8084146	NM_001013439	FXR1		0.876852	1.544861e-34	2.676781e-30	1.163818e-31
24	8101013	8152222	NM_015878	AZIN1		0.876763	1.599625e-34	2.771671e-30	1.154863e-31
25	8101013	7978739	NM_001079537	TRAPPC6B		0.876569	1.725918e-34	2.990498e-30	1.196199e-31
26	8101013	7972062	NM_012158	FBXL3		0.876283	1.930179e-34	3.344422e-30	1.286316e-31
27	8101013	8055672	NM_015702	MMADHC		0.875460	2.657365e-34	4.604417e-30	1.705340e-31
28	8101013	7913712	NM_006625	SRSF10		0.875191	2.948574e-34	5.108994e-30	1.824641e-31
29	8101013	8047339	NR_026584	BZW1L1		0.874869	3.338320e-34	5.784307e-30	1.994589e-31
30	8101013	8095773	NM_003715	USO1		0.873865	4.907566e-34	8.503339e-30	2.834446e-31
31	8101013	7926836	NM_021252	RAB18		0.873797	5.035255e-34	8.724586e-30	2.814383e-31
32	8101013	8044766	NM_016133	INSIG2		0.873440	5.770600e-34	9.998719e-30	3.124600e-31
33	8101013	8113064	NM_198273	LYSMD3		0.873425	5.803262e-34	1.005531e-29	3.047064e-31
34	8101013	7903239	NM_000028	AGL		0.872716	7.593970e-34	1.315807e-29	3.870021e-31
35	8101013	8042270	NM_001001521	UGP2		0.871287	1.299423e-33	2.251510e-29	6.432885e-31
36	8101013	7956937	NM_015646	RAP1B		0.870995	1.449130e-33	2.510907e-29	6.974743e-31
37	8101013	8152041	NM_183419	RNF19A		0.870094	2.024974e-33	3.508672e-29	9.482898e-31
38	8101013	8023735	NM_019022	TMX3		0.869657	2.379806e-33	4.123490e-29	1.085129e-30
39	8101013	8135688	NM_016200	NAA38		0.868951	3.085297e-33	5.345893e-29	1.370742e-30
40	8101013	8069711	NM_015565	RNF160		0.868863	3.186510e-33	5.521266e-29	1.380317e-30
41	8101013	7964250	NM_006601	PTGES3		0.868589	3.521799e-33	6.102222e-29	1.488347e-30
42	8101013	7916570	NM_145243	OMA1		0.868507	3.628665e-33	6.287388e-29	1.496997e-30
43	8101013	8092849	NM_024524	ATP13A3		0.868477	3.668899e-33	6.357101e-29	1.478396e-30
44	8101013	8039947	NM_006625	SRSF10		0.868320	3.886091e-33	6.733429e-29	1.530325e-30
45	8101013	7924190	NM_144567	ANGEL2		0.868103	4.204882e-33	7.285799e-29	1.619066e-30
46	8101013	7973902	NM_003136	SRP54		0.868087	4.230415e-33	7.330041e-29	1.593487e-30
47	8101013	7912852	NM_001412	EIF1AX		0.867911	4.509947e-33	7.814385e-29	1.662635e-30
48	8101013	7903032	NM_007358	MTF2		0.867698	4.871213e-33	8.440351e-29	1.758407e-30
49	8101013	8140942	NM_001040057	FAM133B		0.867626	5.000834e-33	8.664944e-29	1.768356e-30
50	8101013	8063283	NM_001316	CSE1L		0.867275	5.679457e-33	9.840795e-29	1.968159e-30

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.