[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
837	8164087	NM_033334	NR6A1		nuclear receptor subfamily 6, group A, member 1

Fetching correlation data, please wait...
Getting list of correlations for id 837.
Getting list of p-values for id 837.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.132 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8164087	8113071	ENST00000440769		0.575861	1.303252e-10	2.258144e-6	2.258144e-6
2	8164087	7917359	NM_017953	ZNHIT6	-0.569574	2.286721e-10	3.962201e-6	1.981101e-6
3	8164087	8044512	ENST00000327581		0.566186	3.081176e-10	5.338754e-6	1.779585e-6
4	8164087	7947138	NM_022725	FANCF	-0.563428	3.917736e-10	6.788261e-6	1.697065e-6
5	8164087	7973363	NM_173527	REM2	0.561296	4.710033e-10	8.161073e-6	1.632215e-6
6	8164087	8091103	NM_006286	TFDP2	-0.559518	5.486556e-10	9.506555e-6	1.584426e-6
7	8164087	7931081	NM_021622	PLEKHA1	-0.558035	6.227404e-10	1.079022e-5	1.541460e-6
8	8164087	7906852	NM_175866	UHMK1	-0.554114	8.677270e-10	1.503511e-5	1.879388e-6
9	8164087	8023561	NM_005570	LMAN1	-0.554018	8.747274e-10	1.515640e-5	1.684045e-6
10	8164087	8111892	NM_000436	OXCT1	-0.552766	9.716130e-10	1.683514e-5	1.683514e-6
11	8164087	8095574	NM_000788	DCK	-0.550181	1.205151e-9	2.088165e-5	1.898331e-6
12	8164087	8107282	NM_139281	WDR36	-0.550173	1.205925e-9	2.089506e-5	1.741255e-6
13	8164087	8059319	NM_005687	FARSB	-0.548410	1.395322e-9	2.417674e-5	1.859749e-6
14	8164087	7978285	NM_139247	ADCY4	0.544495	1.923381e-9	3.332642e-5	2.380459e-6
15	8164087	8160332	NM_004529	MLLT3	-0.543921	2.015291e-9	3.491894e-5	2.327930e-6
16	8164087	7944185	NM_000073	CD3G	-0.540379	2.683360e-9	4.649458e-5	2.905911e-6
17	8164087	8059854	NM_005737	ARL4C	-0.537727	3.317550e-9	5.748319e-5	3.381364e-6
18	8164087	7972003	NM_007249	KLF12	-0.537252	3.445362e-9	5.969780e-5	3.316544e-6
19	8164087	7927955	NM_015634	KIAA1279	-0.537192	3.461885e-9	5.998408e-5	3.157057e-6
20	8164087	7906185	NM_144772	APOA1BP	-0.535736	3.885799e-9	6.732925e-5	3.366462e-6
21	8164087	8088247	NM_001128615	ARHGEF3	-0.528939	6.615437e-9	1.146257e-4	5.458365e-6
22	8164087	8097262	NM_145207	SPATA5	-0.528835	6.668681e-9	1.155482e-4	5.252193e-6
23	8164087	7923798	NM_022731	NUCKS1	-0.528705	6.736473e-9	1.167229e-4	5.074908e-6
24	8164087	7914184	NM_000952	PTAFR	0.528593	6.794930e-9	1.177358e-4	4.905656e-6
25	8164087	8051793	NM_148962	OXER1	0.527748	7.253324e-9	1.256783e-4	5.027134e-6
26	8164087	7903393	NM_001400	S1PR1	-0.527631	7.318769e-9	1.268123e-4	4.877396e-6
27	8164087	8048120	NM_004044	ATIC	-0.524832	9.072335e-9	1.571964e-4	5.822087e-6
28	8164087	8044849	NM_002830	PTPN4	-0.524806	9.090504e-9	1.575112e-4	5.625399e-6
29	8164087	8074307	AK094477	LOC100129113	0.524321	9.433460e-9	1.634536e-4	5.636330e-6
30	8164087	8070912	NM_194255	SLC19A1	0.523380	1.013411e-8	1.755936e-4	5.853122e-6
31	8164087	7944179	NM_000733	CD3E	-0.523252	1.023295e-8	1.773064e-4	5.719561e-6
32	8164087	8045075	NM_001161415	GPR17	0.522609	1.074555e-8	1.861881e-4	5.818379e-6
33	8164087	8162313	NM_013417	IARS	-0.522170	1.110854e-8	1.924777e-4	5.832657e-6
34	8164087	8140129	NR_026912	ABHD11	0.521959	1.128754e-8	1.955792e-4	5.752330e-6
35	8164087	7996807	NM_133458	ZFP90	-0.520682	1.243073e-8	2.153872e-4	6.153920e-6
36	8164087	8047677	NM_006139	CD28	-0.520663	1.244848e-8	2.156949e-4	5.991524e-6
37	8164087	8129410	NM_001010923	THEMIS	-0.520539	1.256543e-8	2.177212e-4	5.884356e-6
38	8164087	8020323	NM_003799	RNMT	-0.520465	1.263528e-8	2.189315e-4	5.761354e-6
39	8164087	7959016	NR_027345	NCRNA00173	0.518962	1.414693e-8	2.451238e-4	6.285226e-6
40	8164087	7996012	NM_012106	ARL2BP	-0.517859	1.536375e-8	2.662078e-4	6.655194e-6
41	8164087	8142912	NM_032842	TMEM209	-0.517763	1.547377e-8	2.681139e-4	6.539364e-6
42	8164087	7942261	NM_005553	KRTAP5-9	0.517483	1.580090e-8	2.737823e-4	6.518626e-6
43	8164087	8168531	NM_032553	GPR174	-0.516667	1.679146e-8	2.909455e-4	6.766175e-6
44	8164087	8091354	NM_003071	HLTF	-0.516287	1.727265e-8	2.992832e-4	6.801891e-6
45	8164087	7937483	NR_002585	SNORA52	0.514436	1.981145e-8	3.432731e-4	7.628290e-6
46	8164087	8162664	AY358791	LOC100130916	0.513853	2.068311e-8	3.583762e-4	7.790787e-6
47	8164087	8152255	NM_030780	SLC25A32	-0.513613	2.105176e-8	3.647638e-4	7.760931e-6
48	8164087	7935251	NM_015631	TCTN3	-0.512944	2.211513e-8	3.831888e-4	7.983100e-6
49	8164087	7975562	NM_173462	PAPLN	0.512331	2.313250e-8	4.008168e-4	8.179935e-6
50	8164087	8169240	NM_002764	PRPS1	-0.511717	2.419771e-8	4.192737e-4	8.385474e-6

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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