[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2169	8091354	NM_003071	HLTF		helicase-like transcription factor

Fetching correlation data, please wait...
Getting list of correlations for id 2169.
Getting list of p-values for id 2169.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.141 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8091354	7954279	NM_153207	AEBP2	0.813769	5.087346e-26	8.814845e-22	8.814845e-22
2	8091354	7970569	NM_014363	SACS	0.805322	3.969289e-25	6.877587e-21	3.438793e-21
3	8091354	8128472	NM_006828	ASCC3	0.798789	1.816488e-24	3.147429e-20	1.049143e-20
4	8091354	7917103	NM_015534	ZZZ3	0.796390	3.131651e-24	5.426212e-20	1.356553e-20
5	8091354	8116534	NM_032765	TRIM52	0.793152	6.457075e-24	1.118817e-19	2.237635e-20
6	8091354	8107942	NM_005732	RAD50	0.791565	9.162900e-24	1.587656e-19	2.646093e-20
7	8091354	8147156	NM_007013	WWP1	0.789945	1.305507e-23	2.262052e-19	3.231503e-20
8	8091354	8052562	NM_006430	CCT4	0.788771	1.684426e-23	2.918605e-19	3.648257e-20
9	8091354	8023165	NM_032124	HDHD2	0.787898	2.033346e-23	3.523178e-19	3.914642e-20
10	8091354	8027416	NM_003796	C19orf2	0.787238	2.343183e-23	4.060034e-19	4.060034e-20
11	8091354	8121734	NM_014034	ASF1A	0.784699	4.024260e-23	6.972835e-19	6.338941e-20
12	8091354	8097262	NM_145207	SPATA5	0.783551	5.127102e-23	8.883730e-19	7.403108e-20
13	8091354	7953878	NM_001004419	CLEC2D	0.783477	5.206877e-23	9.021955e-19	6.939965e-20
14	8091354	8131479	NM_019005	MIOS	0.783428	5.261613e-23	9.116798e-19	6.511998e-20
15	8091354	7986769	NM_130839	UBE3A	0.783249	5.462214e-23	9.464379e-19	6.309586e-20
16	8091354	8121161	NM_015323	KIAA0776	0.782917	5.857265e-23	1.014888e-18	6.343052e-20
17	8091354	7967386	NM_022782	MPHOSPH9	0.782159	6.863107e-23	1.189171e-18	6.995121e-20
18	8091354	8077513	NM_015453	THUMPD3	0.781852	7.317504e-23	1.267904e-18	7.043910e-20
19	8091354	8023735	NM_019022	TMX3	0.780776	9.151290e-23	1.585644e-18	8.345495e-20
20	8091354	8098985	NM_024511	HAUS3	0.780212	1.028303e-22	1.781740e-18	8.908699e-20
21	8091354	8113733	NM_153223	CEP120	0.779267	1.249395e-22	2.164827e-18	1.030870e-19
22	8091354	8129181	NM_020399	GOPC	0.779169	1.274816e-22	2.208873e-18	1.004033e-19
23	8091354	8044745	NM_006773	DDX18	0.778218	1.549192e-22	2.684285e-18	1.167080e-19
24	8091354	8092564	NM_004593	TRA2B	0.777166	1.920089e-22	3.326938e-18	1.386224e-19
25	8091354	7969935	NM_000123	ERCC5	0.776848	2.048386e-22	3.549239e-18	1.419696e-19
26	8091354	7942914	NM_152991	EED	0.776701	2.110301e-22	3.656519e-18	1.406353e-19
27	8091354	7925364	NM_018072	HEATR1	0.775401	2.744530e-22	4.755447e-18	1.761277e-19
28	8091354	8018038	NM_018672	ABCA5	0.774919	3.024626e-22	5.240769e-18	1.871703e-19
29	8091354	8091190	NM_001184	ATR	0.773441	4.065964e-22	7.045096e-18	2.429343e-19
30	8091354	7938448	NM_017944	USP47	0.773213	4.255171e-22	7.372934e-18	2.457645e-19
31	8091354	8028227	NM_152604	ZNF383	0.772807	4.613377e-22	7.993598e-18	2.578580e-19
32	8091354	8050367	NM_015909	NBAS	0.772712	4.701437e-22	8.146180e-18	2.545681e-19
33	8091354	7943580	NM_003478	CUL5	0.772378	5.024185e-22	8.705405e-18	2.638002e-19
34	8091354	7915995	NM_007051	FAF1	0.772040	5.372317e-22	9.308613e-18	2.737827e-19
35	8091354	8055060	NM_018383	WDR33	0.771525	5.949057e-22	1.030793e-17	2.945123e-19
36	8091354	8111629	NM_153485	NUP155	0.771048	6.536396e-22	1.132561e-17	3.146004e-19
37	8091354	7969114	NM_031915	SETDB2	0.770836	6.814420e-22	1.180735e-17	3.191174e-19
38	8091354	8141133	NM_006304	SHFM1	0.769586	8.709418e-22	1.509081e-17	3.971265e-19
39	8091354	7970473	NM_022459	XPO4	0.769431	8.978039e-22	1.555625e-17	3.988781e-19
40	8091354	8104350	NM_015325	KIAA0947	0.768395	1.098780e-21	1.903856e-17	4.759640e-19
41	8091354	8040386	NM_004939	DDX1	0.765996	1.747227e-21	3.027420e-17	7.383951e-19
42	8091354	8140878	NM_194455	KRIT1	0.765992	1.748471e-21	3.029575e-17	7.213275e-19
43	8091354	8105181	NM_016640	MRPS30	0.765863	1.792275e-21	3.105475e-17	7.222035e-19
44	8091354	7932433	NM_182543	NSUN6	0.765825	1.805420e-21	3.128251e-17	7.109662e-19
45	8091354	8066136	NM_002895	RBL1	0.765517	1.915316e-21	3.318669e-17	7.374820e-19
46	8091354	8020323	NM_003799	RNMT	0.765504	1.920377e-21	3.327437e-17	7.233559e-19
47	8091354	7995421	NM_031490	LONP2	0.765106	2.072381e-21	3.590815e-17	7.640032e-19
48	8091354	8130438	NM_016020	TFB1M	0.764828	2.185349e-21	3.786554e-17	7.888654e-19
49	8091354	8088219	NM_001112736	C3orf63	0.764253	2.438711e-21	4.225555e-17	8.623581e-19
50	8091354	7903188	NM_021190	PTBP2	0.763766	2.675660e-21	4.636116e-17	9.272232e-19

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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