[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1714	7904927	NM_005267	GJA8		gap junction protein, alpha 8, 50kDa

Fetching correlation data, please wait...
Getting list of correlations for id 1714.
Getting list of p-values for id 1714.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.148 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7904927	8067506	BC137326	C20orf151	0.786989	2.471557e-23	4.282466e-19	4.282466e-19
2	7904927	7931439	NM_006426	DPYSL4	0.786245	2.897645e-23	5.020750e-19	2.510375e-19
3	7904927	7913450	NM_005529	HSPG2	0.770018	8.003233e-22	1.386720e-17	4.622401e-18
4	7904927	8028407	NM_000540	RYR1	0.762135	3.643413e-21	6.312942e-17	1.578236e-17
5	7904927	7899265	NM_006142	SFN	0.756692	1.003211e-20	1.738264e-16	3.476529e-17
6	7904927	7952752	NM_007037	ADAMTS8	0.752619	2.104140e-20	3.645844e-16	6.076406e-17
7	7904927	8053872	NM_001002036	ASTL	0.746606	6.118857e-20	1.060214e-15	1.514592e-16
8	7904927	8174263	NM_001024452	GLRA4	0.745210	7.807211e-20	1.352755e-15	1.690944e-16
9	7904927	8028325	NM_033520	C19orf33	0.743409	1.066486e-19	1.847901e-15	2.053223e-16
10	7904927	7899911	NM_001134734	C1orf94	0.742130	1.328923e-19	2.302626e-15	2.302626e-16
11	7904927	8114550	NM_004883	NRG2	0.741779	1.411241e-19	2.445257e-15	2.222961e-16
12	7904927	8032699	NM_015174	ZFR2	0.741176	1.564320e-19	2.710498e-15	2.258748e-16
13	7904927	8153101	NM_152888	COL22A1	0.740688	1.700018e-19	2.945621e-15	2.265863e-16
14	7904927	8064059	NM_020882	COL20A1	0.734306	4.963473e-19	8.600210e-15	6.143007e-16
15	7904927	8092888	NM_138399	TMEM44	0.733475	5.693679e-19	9.865438e-15	6.576959e-16
16	7904927	8125568	NM_080680	COL11A2	0.732392	6.803351e-19	1.178817e-14	7.367604e-16
17	7904927	8005328	NM_016239	MYO15A	0.731881	7.396895e-19	1.281660e-14	7.539176e-16
18	7904927	8159318	NM_001145638	GPSM1	0.731226	8.232359e-19	1.426421e-14	7.924560e-16
19	7904927	8082928	NM_001002026	CLDN18	0.730145	9.816293e-19	1.700869e-14	8.951942e-16
20	7904927	8034469	NM_032301	FBXW9	0.728928	1.195513e-18	2.071466e-14	1.035733e-15
21	7904927	7985620	NM_020778	ALPK3	0.728343	1.313804e-18	2.276428e-14	1.084013e-15
22	7904927	8011912	NM_014336	AIPL1	0.728338	1.314984e-18	2.278473e-14	1.035669e-15
23	7904927	7946860	NM_000352	ABCC8	0.728179	1.349035e-18	2.337473e-14	1.016293e-15
24	7904927	8034151	NM_020812	DOCK6	0.727976	1.393768e-18	2.414982e-14	1.006242e-15
25	7904927	7942123	NM_053056	CCND1	0.727960	1.397482e-18	2.421416e-14	9.685666e-16
26	7904927	8062064	NM_020884	MYH7B	0.726859	1.667471e-18	2.889228e-14	1.111241e-15
27	7904927	8157383	NM_032888	COL27A1	0.726088	1.886075e-18	3.268003e-14	1.210371e-15
28	7904927	7927383	NM_153034	ZNF488	0.726052	1.896775e-18	3.286543e-14	1.173765e-15
29	7904927	8007259	ENST00000225928		0.726035	1.901941e-18	3.295493e-14	1.136377e-15
30	7904927	8036989	ENST00000412510		0.726026	1.904875e-18	3.300577e-14	1.100192e-15
31	7904927	8003719	NM_001098202	HIC1	0.725651	2.022043e-18	3.503595e-14	1.130192e-15
32	7904927	7977418	NM_001134875	C14orf80	0.725432	2.093653e-18	3.627672e-14	1.133648e-15
33	7904927	7926871			0.725303	2.137259e-18	3.703229e-14	1.122191e-15
34	7904927	8092201	NM_024665	TBL1XR1	-0.724007	2.624507e-18	4.547483e-14	1.337495e-15
35	7904927	8029950	NM_014601	EHD2	0.723874	2.680404e-18	4.644336e-14	1.326953e-15
36	7904927	8132832	AK057400	LOC100129427	0.723058	3.048130e-18	5.281494e-14	1.467082e-15
37	7904927	8038093	NM_001080434	LMTK3	0.722101	3.542674e-18	6.138391e-14	1.659025e-15
38	7904927	8138450	NM_152898	FERD3L	0.722057	3.567405e-18	6.181243e-14	1.626643e-15
39	7904927	7998910	NM_001103175	CCDC64B	0.721884	3.665071e-18	6.350469e-14	1.628325e-15
40	7904927	7950023	NM_005117	FGF19	0.721830	3.696563e-18	6.405035e-14	1.601259e-15
41	7904927	8070925	ENST00000455651		0.721761	3.736641e-18	6.474477e-14	1.579141e-15
42	7904927	7987701	NM_016642	SPTBN5	0.721436	3.931161e-18	6.811523e-14	1.621791e-15
43	7904927	8134827	NM_173564	C7orf51	0.720554	4.511436e-18	7.816966e-14	1.817899e-15
44	7904927	8070933	NM_006657	FTCD	0.720156	4.799597e-18	8.316262e-14	1.890060e-15
45	7904927	8093112	NM_015562	UBXN7	-0.720156	4.799785e-18	8.316587e-14	1.848130e-15
46	7904927	8136080	NM_005631	SMO	0.718907	5.824452e-18	1.009203e-13	2.193919e-15
47	7904927	8077817	NM_014229	SLC6A11	0.718560	6.146016e-18	1.064920e-13	2.265788e-15
48	7904927	8060094	NM_148961	OTOS	0.717497	7.238546e-18	1.254223e-13	2.612964e-15
49	7904927	8014269	NM_139285	GAS2L2	0.717097	7.697272e-18	1.333706e-13	2.721850e-15
50	7904927	8049942	NM_080741	NEU4	0.716197	8.834240e-18	1.530709e-13	3.061418e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation