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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id Label1 AccNum GeneSym Info Gene Name
2620 8171087 NM_013239 PPP2R3B link to infopage protein phosphatase 2, regulatory subunit B'', beta
3280 8176986 NM_013239 PPP2R3B link to infopage protein phosphatase 2, regulatory subunit B'', beta

Fetching correlation data, please wait...
Getting list of correlations for id 2620.
Getting list of p-values for id 2620.
1 of 2 done.
Getting list of correlations for id 3280.
Getting list of p-values for id 3280.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.241 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8171087 8176986 NM_013239 PPP2R3B link to infopage 0.981172 2.220035e-75 7.693309e-71 7.693309e-71
2 8176986 8171087 NM_013239 PPP2R3B link to infopage 0.981172 2.220035e-75 7.693309e-71 3.846655e-71
3 8171087 8062948 NM_014276 RBPJL link to infopage 0.806841 2.763454e-25 9.576474e-21 3.192158e-21
4 8171087 8165538 NM_001033113 ENTPD8 link to infopage 0.790324 1.202225e-23 4.166189e-19 1.041547e-19
5 8171087 8061303 NM_002196 INSM1 link to infopage 0.786737 2.608280e-23 9.038733e-19 1.807747e-19
6 8171087 8038362 NM_178449 PTH2 link to infopage 0.785691 3.260233e-23 1.129801e-18 1.883002e-19
7 8171087 7945536 NM_016564 CEND1 link to infopage 0.785205 3.615142e-23 1.252791e-18 1.789702e-19
8 8171087 7949015 NM_001144936 C11orf95 link to infopage 0.785138 3.666984e-23 1.270757e-18 1.588446e-19
9 8176986 8070933 NM_006657 FTCD link to infopage 0.780685 9.324353e-23 3.231261e-18 3.590290e-19
10 8176986 8007259 ENST00000225928 link to infopage 0.780360 9.972801e-23 3.455975e-18 3.455975e-19
11 8171087 8070933 NM_006657 FTCD link to infopage 0.780327 1.004085e-22 3.479556e-18 3.163233e-19
12 8171087 7974047 NM_001049 SSTR1 link to infopage 0.779091 1.295381e-22 4.489012e-18 3.740844e-19
13 8171087 8117172 NM_138574 HDGFL1 link to infopage 0.777125 1.936107e-22 6.709385e-18 5.161066e-19
14 8171087 8098740 NM_033178 DUX4 link to infopage 0.775523 2.678239e-22 9.281171e-18 6.629408e-19
15 8171087 8016320 NM_203400 RPRML link to infopage 0.775498 2.691772e-22 9.328066e-18 6.218711e-19
16 8176986 8117172 NM_138574 HDGFL1 link to infopage 0.775084 2.925684e-22 1.013867e-17 6.336666e-19
17 8171087 8098732 NM_033178 DUX4 link to infopage 0.773028 4.414928e-22 1.529949e-17 8.999700e-19
18 8171087 7947928 NM_031909 C1QTNF4 link to infopage 0.772213 5.191100e-22 1.798924e-17 9.994021e-19
19 8171087 8136080 NM_005631 SMO link to infopage 0.771933 5.487683e-22 1.901702e-17 1.000896e-18
20 8176986 7974047 NM_001049 SSTR1 link to infopage 0.771719 5.724819e-22 1.983879e-17 9.919394e-19
21 8176986 7945536 NM_016564 CEND1 link to infopage 0.770678 7.029767e-22 2.436096e-17 1.160045e-18
22 8171087 8076747 AK123383 LOC642648 link to infopage 0.770063 7.932267e-22 2.748848e-17 1.249476e-18
23 8176986 8038362 NM_178449 PTH2 link to infopage 0.769008 9.751715e-22 3.379359e-17 1.469287e-18
24 8176986 7947991 NM_015231 NUP160 link to infopage -0.768240 1.132340e-21 3.924009e-17 1.635004e-18
25 8171087 7935528 NM_003015 SFRP5 link to infopage 0.768009 1.184472e-21 4.104669e-17 1.641868e-18
26 8176986 8062948 NM_014276 RBPJL link to infopage 0.767535 1.298273e-21 4.499037e-17 1.730399e-18
27 8171087 8046564 NM_024501 HOXD1 link to infopage 0.766846 1.483371e-21 5.140475e-17 1.903880e-18
28 8176986 8076747 AK123383 LOC642648 link to infopage 0.766454 1.599859e-21 5.544150e-17 1.980054e-18
29 8176986 8016320 NM_203400 RPRML link to infopage 0.765942 1.765424e-21 6.117899e-17 2.109620e-18
30 8171087 8049799 NM_001001891 ANO7 link to infopage 0.765430 1.947816e-21 6.749963e-17 2.249988e-18
31 8171087 7986822 NM_000814 GABRB3 link to infopage 0.765290 2.000758e-21 6.933427e-17 2.236589e-18
32 8171087 8035249 NM_005234 NR2F6 link to infopage 0.765236 2.021483e-21 7.005248e-17 2.189140e-18
33 8176986 8136080 NM_005631 SMO link to infopage 0.764107 2.507663e-21 8.690054e-17 2.633350e-18
34 8171087 8031489 NM_033113 ZNF628 link to infopage 0.764069 2.525943e-21 8.753403e-17 2.574530e-18
35 8171087 8062880 NM_003404 YWHAB link to infopage -0.764053 2.533455e-21 8.779434e-17 2.508410e-18
36 8176986 8016077 NM_001002909 GPATCH8 link to infopage -0.763976 2.571100e-21 8.909891e-17 2.474970e-18
37 8171087 7981447 NM_001100119 XRCC3 link to infopage 0.763368 2.885541e-21 9.999553e-17 2.702582e-18
38 8171087 8110237 NM_133369 UNC5A link to infopage 0.763059 3.059962e-21 1.060399e-16 2.790524e-18
39 8171087 8007259 ENST00000225928 link to infopage 0.762874 3.169110e-21 1.098223e-16 2.815957e-18
40 8176986 7952752 NM_007037 ADAMTS8 link to infopage 0.762560 3.363105e-21 1.165450e-16 2.913626e-18
41 8171087 8004763 NM_000180 GUCY2D link to infopage 0.762223 3.583921e-21 1.241972e-16 3.029200e-18
42 8176986 7903369 NM_133496 SLC30A7 link to infopage -0.762060 3.695387e-21 1.280599e-16 3.049046e-18
43 8171087 8125383 NM_004557 NOTCH4 link to infopage 0.761865 3.833987e-21 1.328630e-16 3.089837e-18
44 8176986 8165538 NM_001033113 ENTPD8 link to infopage 0.761644 3.996650e-21 1.384999e-16 3.147725e-18
45 8171087 8060533 BC021178 LOC100288797 link to infopage 0.761563 4.058221e-21 1.406336e-16 3.125191e-18
46 8171087 8104122 NM_033178 DUX4 link to infopage 0.761258 4.296980e-21 1.489075e-16 3.237120e-18
47 8176986 8033433 NM_198492 CLEC4G link to infopage 0.760976 4.530470e-21 1.569989e-16 3.340402e-18
48 8171087 8060505 NM_001110514 EBF4 link to infopage 0.760139 5.299290e-21 1.836416e-16 3.825866e-18
49 8171087 7947991 NM_015231 NUP160 link to infopage -0.759581 5.880224e-21 2.037733e-16 4.158639e-18
50 8171087 7952752 NM_007037 ADAMTS8 link to infopage 0.759307 6.187668e-21 2.144274e-16 4.288549e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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