[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1808	8109333	NM_002084	GPX3		glutathione peroxidase 3 (plasma)

Fetching correlation data, please wait...
Getting list of correlations for id 1808.
Getting list of p-values for id 1808.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.143 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8109333	8142747	NM_006193	PAX4	0.700560	8.918426e-17	1.545296e-12	1.545296e-12
2	8109333	8138865	NM_001883	CRHR2	0.688385	4.878607e-16	8.453162e-12	4.226581e-12
3	8109333	7930264	NM_004210	NEURL	0.674551	3.049747e-15	5.284297e-11	1.761432e-11
4	8109333	7914667	NM_052896	CSMD2	0.670150	5.352879e-15	9.274934e-11	2.318733e-11
5	8109333	7942717	NM_000260	MYO7A	0.670013	5.446429e-15	9.437027e-11	1.887405e-11
6	8109333	8137783	NM_001097620	TMEM184A	0.666832	8.128525e-15	1.408430e-10	2.347383e-11
7	8109333	7980828	NM_001080414	CCDC88C	-0.665882	9.152214e-15	1.585804e-10	2.265434e-11
8	8109333	8096556	NM_015143	METAP1	-0.664330	1.109926e-14	1.923168e-10	2.403960e-11
9	8109333	8023154	NM_001100817	TCEB3CL	0.661332	1.606019e-14	2.782749e-10	3.091943e-11
10	8109333	7945688	NR_003512	INS-IGF2	0.659957	1.899917e-14	3.291987e-10	3.291987e-11
11	8109333	7995310	ENST00000319817		0.657524	2.552155e-14	4.422118e-10	4.020108e-11
12	8109333	8006562	NM_033315	RASL10B	0.655985	3.072005e-14	5.322864e-10	4.435720e-11
13	8109333	8097687	NM_004575	POU4F2	0.654768	3.553753e-14	6.157588e-10	4.736606e-11
14	8109333	7906852	NM_175866	UHMK1	-0.654233	3.788243e-14	6.563889e-10	4.688492e-11
15	8109333	8023561	NM_005570	LMAN1	-0.654117	3.841188e-14	6.655626e-10	4.437084e-11
16	8109333	7937560	NM_002457	MUC2	0.653575	4.097434e-14	7.099624e-10	4.437265e-11
17	8109333	8023152	NM_001100817	TCEB3CL	0.653195	4.286847e-14	7.427820e-10	4.369306e-11
18	8109333	8115691	NM_003062	SLIT3	0.653027	4.373278e-14	7.577578e-10	4.209766e-11
19	8109333	8149646	NM_024815	NUDT18	0.650329	6.014441e-14	1.042122e-9	5.484853e-11
20	8109333	8059689	NM_005381	NCL	-0.648718	7.264873e-14	1.258785e-9	6.293923e-11
21	8109333	7998015	NM_032451	SPIRE2	0.648207	7.711391e-14	1.336153e-9	6.362632e-11
22	8109333	7987701	NM_016642	SPTBN5	0.646875	9.003934e-14	1.560112e-9	7.091416e-11
23	8109333	8114550	NM_004883	NRG2	0.646855	9.024712e-14	1.563712e-9	6.798747e-11
24	8109333	7947991	NM_015231	NUP160	-0.646571	9.327085e-14	1.616104e-9	6.733767e-11
25	8109333	8157610	NM_032552	DAB2IP	0.643754	1.290693e-13	2.236384e-9	8.945535e-11
26	8109333	8138474	NM_198956	SP8	0.642842	1.432749e-13	2.482524e-9	9.548169e-11
27	8109333	8073992	NM_052839	PANX2	0.642675	1.460404e-13	2.530441e-9	9.372005e-11
28	8109333	8179716	NM_001264	CDSN	0.641975	1.581847e-13	2.740866e-9	9.788808e-11
29	8109333	8012326	NM_021628	ALOXE3	0.641829	1.608368e-13	2.786820e-9	9.609723e-11
30	8109333	8038299	NM_033142	CGB7	0.641448	1.679586e-13	2.910218e-9	9.700726e-11
31	8109333	8019243	NM_001007533	DYSFIP1	0.641302	1.707765e-13	2.959044e-9	9.545305e-11
32	8109333	8136080	NM_005631	SMO	0.641301	1.707964e-13	2.959388e-9	9.248089e-11
33	8109333	8004394	NM_199339	SPEM1	0.640401	1.891633e-13	3.277632e-9	9.932219e-11
34	8109333	7906307	NM_018240	KIRREL	0.639828	2.018417e-13	3.497311e-9	1.028621e-10
35	8109333	7946860	NM_000352	ABCC8	0.638855	2.252715e-13	3.903279e-9	1.115223e-10
36	8109333	8012309	NM_001139	ALOX12B	0.638512	2.341444e-13	4.057020e-9	1.126950e-10
37	8109333	8042335	NM_003375	VDAC2	-0.638415	2.367175e-13	4.101604e-9	1.108542e-10
38	8109333	7949873	NM_080658	ACY3	0.638412	2.367876e-13	4.102819e-9	1.079689e-10
39	8109333	8028613	NM_172140	IL29	0.637323	2.675909e-13	4.636547e-9	1.188858e-10
40	8109333	8048452	NM_025216	WNT10A	0.637080	2.749533e-13	4.764116e-9	1.191029e-10
41	8109333	8165538	NM_001033113	ENTPD8	0.636742	2.855663e-13	4.948007e-9	1.206831e-10
42	8109333	7897066	NR_024445	LOC100128003	0.636112	3.063633e-13	5.308356e-9	1.263894e-10
43	8109333	7992147	NM_021098	CACNA1H	0.634702	3.584331e-13	6.210570e-9	1.444319e-10
44	8109333	8036072	NM_207392	KRTDAP	0.634564	3.639459e-13	6.306090e-9	1.433202e-10
45	8109333	8036591	NM_006149	LGALS4	0.634326	3.736762e-13	6.474687e-9	1.438819e-10
46	8109333	8053142	NM_033046	RTKN	0.634224	3.779324e-13	6.548435e-9	1.423573e-10
47	8109333	8144317	NM_014867	KBTBD11	0.634213	3.784059e-13	6.556639e-9	1.395030e-10
48	8109333	7899562	NM_133178	PTPRU	0.634055	3.850840e-13	6.672350e-9	1.390073e-10
49	8109333	7963880	NM_001144996	ITGA7	0.633964	3.889740e-13	6.739752e-9	1.375460e-10
50	8109333	8051622	NM_001031684	SRSF7	-0.633745	3.985274e-13	6.905284e-9	1.381057e-10

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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