[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7225	8143070	NM_014149	WDR91		WD repeat domain 91

Fetching correlation data, please wait...
Getting list of correlations for id 7225.
Getting list of p-values for id 7225.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.127 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8143070	8156321	NM_003177	SYK	0.588532	4.044025e-11	7.007083e-7	7.007083e-7
2	8143070	8157253	NM_001012994	SNX30	0.576256	1.257488e-10	2.178849e-6	1.089425e-6
3	8143070	8002194	NM_022355	DPEP2	0.576014	1.285334e-10	2.227098e-6	7.423659e-7
4	8143070	8173009	NM_015107	PHF8	0.567374	2.776405e-10	4.810676e-6	1.202669e-6
5	8143070	8058477	NM_003709	KLF7	0.559101	5.685850e-10	9.851872e-6	1.970374e-6
6	8143070	7948574	NM_024811	CPSF7	0.556809	6.910996e-10	1.197468e-5	1.995780e-6
7	8143070	8180144	NM_004761	RGL2	0.556703	6.973270e-10	1.208259e-5	1.726084e-6
8	8143070	8178955	NM_004761	RGL2	0.556703	6.973270e-10	1.208259e-5	1.510323e-6
9	8143070	7919872	NM_018379	FAM63A	0.554425	8.453167e-10	1.464680e-5	1.627422e-6
10	8143070	7897482	NM_005026	PIK3CD	0.550036	1.219693e-9	2.113362e-5	2.113362e-6
11	8143070	8141241	NM_020429	SMURF1	0.548383	1.398490e-9	2.423164e-5	2.202877e-6
12	8143070	8170891	NM_001493	GDI1	0.546929	1.576180e-9	2.731046e-5	2.275872e-6
13	8143070	8167069	NM_003334	UBA1	0.546733	1.601783e-9	2.775410e-5	2.134931e-6
14	8143070	7966600	NM_024959	SLC24A6	0.544297	1.954570e-9	3.386683e-5	2.419059e-6
15	8143070	8126446	NM_001008739	C6orf226	-0.543713	2.049594e-9	3.551332e-5	2.367555e-6
16	8143070	7963721	NM_020898	CALCOCO1	0.541943	2.365659e-9	4.098977e-5	2.561860e-6
17	8143070	7926059	ENST00000364711		0.540715	2.611783e-9	4.525436e-5	2.662021e-6
18	8143070	8168215	NM_005120	MED12	0.539590	2.858756e-9	4.953366e-5	2.751870e-6
19	8143070	7898278	NM_015001	SPEN	0.537944	3.260642e-9	5.649714e-5	2.973534e-6
20	8143070	8017675	NR_024386	PLEKHM1P	0.537518	3.373369e-9	5.845037e-5	2.922518e-6
21	8143070	7923453	NM_006618	KDM5B	0.535850	3.850948e-9	6.672537e-5	3.177399e-6
22	8143070	8035144	ENST00000410636		0.534422	4.310819e-9	7.469356e-5	3.395162e-6
23	8143070	8002381	NM_015386	COG4	0.533794	4.529123e-9	7.847612e-5	3.412005e-6
24	8143070	8039096	NM_144687	NLRP12	0.530804	5.723591e-9	9.917267e-5	4.132194e-6
25	8143070	7919888	NM_001038707	CDC42SE1	0.530743	5.750709e-9	9.964254e-5	3.985702e-6
26	8143070	7921752	NM_001025598	ARHGAP30	0.530635	5.799150e-9	1.004819e-4	3.864687e-6
27	8143070	8085486	NM_004628	XPC	0.529263	6.451169e-9	1.117794e-4	4.139978e-6
28	8143070	8011884	NM_033004	NLRP1	0.529148	6.509337e-9	1.127873e-4	4.028117e-6
29	8143070	8086961	NM_004567	PFKFB4	0.524167	9.544889e-9	1.653843e-4	5.702906e-6
30	8143070	7905258	NM_001145415	SETDB1	0.524116	9.581825e-9	1.660243e-4	5.534143e-6
31	8143070	7960666	NM_133476	ZNF384	0.522562	1.078346e-8	1.868451e-4	6.027261e-6
32	8143070	8119109	NM_152734	C6orf89	0.520591	1.251642e-8	2.168720e-4	6.777250e-6
33	8143070	7932796	NM_021738	SVIL	0.520473	1.262797e-8	2.188048e-4	6.630449e-6
34	8143070	8009443	NM_014960	ARSG	0.519928	1.315664e-8	2.279650e-4	6.704854e-6
35	8143070	8155490	NR_003670	KGFLP2	-0.518960	1.414810e-8	2.451441e-4	7.004116e-6
36	8143070	8176255	NM_018196	TMLHE	0.518695	1.443186e-8	2.500608e-4	6.946133e-6
37	8143070	8062041	NM_018677	ACSS2	0.518084	1.510724e-8	2.617632e-4	7.074680e-6
38	8143070	7997453	NM_002661	PLCG2	0.516995	1.638622e-8	2.839241e-4	7.471686e-6
39	8143070	8164105	NM_002077	GOLGA1	0.514994	1.901110e-8	3.294053e-4	8.446289e-6
40	8143070	8007505	NM_004941	DHX8	0.514583	1.959807e-8	3.395757e-4	8.489392e-6
41	8143070	8158783	NM_005085	NUP214	0.514304	2.000536e-8	3.466329e-4	8.454462e-6
42	8143070	8125360	NM_002586	PBX2	0.513531	2.117991e-8	3.669843e-4	8.737722e-6
43	8143070	8018982	NM_138793	CANT1	0.513523	2.119141e-8	3.671836e-4	8.539153e-6
44	8143070	8017402	NM_153335	STRADA	0.513416	2.135906e-8	3.700884e-4	8.411101e-6
45	8143070	8153262	NM_001080431	SLC45A4	0.513120	2.183006e-8	3.782495e-4	8.405545e-6
46	8143070	8132305	NM_030636	EEPD1	0.511150	2.522381e-8	4.370530e-4	9.501152e-6
47	8143070	8125687	NM_004761	RGL2	0.510146	2.714010e-8	4.702566e-4	1.000546e-5
48	8143070	7934477	NM_172171	CAMK2G	0.510140	2.715151e-8	4.704542e-4	9.801129e-6
49	8143070	7927405	NM_020945	WDFY4	0.510110	2.721162e-8	4.714957e-4	9.622362e-6
50	8143070	8044584	NM_012455	PSD4	0.509773	2.788796e-8	4.832146e-4	9.664292e-6

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation