[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2580	8070129	NM_017613	DONSON		downstream neighbor of SON

Fetching correlation data, please wait...
Getting list of correlations for id 2580.
Getting list of p-values for id 2580.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.122 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8070129	8044961	NR_023343	RNU4ATAC	0.516388	1.714392e-8	2.970527e-4	2.970527e-4
2	8070129	8040549			0.514619	1.954548e-8	3.386645e-4	1.693322e-4
3	8070129	7901309	NM_012186	FOXE3	0.507147	3.373277e-8	5.844877e-4	1.948292e-4
4	8070129	8039090			0.492523	9.458871e-8	1.638939e-3	4.097347e-4
5	8070129	7898677	NM_004807	HS6ST1	0.491278	1.030357e-7	1.785299e-3	3.570598e-4
6	8070129	8036557			0.485768	1.498665e-7	2.596738e-3	4.327896e-4
7	8070129	7942594	NR_000025	SNORD15B	0.485583	1.517442e-7	2.629272e-3	3.756103e-4
8	8070129	8137225	NM_013400	REPIN1	0.484360	1.647536e-7	2.854685e-3	3.568356e-4
9	8070129	8073743	NM_006953	UPK3A	0.480694	2.103886e-7	3.645403e-3	4.050448e-4
10	8070129	8007348	NM_005854	RAMP2	0.479075	2.341752e-7	4.057553e-3	4.057553e-4
11	8070129	7956242	NM_144576	COQ10A	0.478631	2.411392e-7	4.178218e-3	3.798380e-4
12	8070129	8118794	NM_145899	HMGA1	0.478193	2.481819e-7	4.300247e-3	3.583539e-4
13	8070129	7919578	AK125737	LOC440570	0.476807	2.718321e-7	4.710035e-3	3.623104e-4
14	8070129	8111930	AK075204	LOC100132356	0.476596	2.756142e-7	4.775567e-3	3.411119e-4
15	8070129	7945394	NM_001012302	ANO9	0.476158	2.836247e-7	4.914366e-3	3.276244e-4
16	8070129	8104447	ENST00000410122		0.475134	3.032282e-7	5.254035e-3	3.283772e-4
17	8070129	8019802			0.473430	3.387425e-7	5.869391e-3	3.452583e-4
18	8070129	8004867	NM_001025579	NDEL1	-0.472588	3.576958e-7	6.197796e-3	3.443220e-4
19	8070129	7939805	NM_001128225	SLC39A13	0.468607	4.619313e-7	8.003883e-3	4.212570e-4
20	8070129	7976322	NM_001275	CHGA	0.465980	5.458558e-7	9.458043e-3	4.729021e-4
21	8070129	8097687	NM_004575	POU4F2	0.465171	5.744857e-7	9.954114e-3	4.740054e-4
22	8070129	8014454	NM_025109	MYO19	0.464127	6.135759e-7	1.063143e-2	4.832468e-4
23	8070129	8002245	ENST00000458872		0.463075	6.555027e-7	1.135790e-2	4.938215e-4
24	8070129	hsa-miR-768-3p			0.462785	6.675109e-7	1.156596e-2	4.819151e-4
25	8070129	7941865	NM_004584	RAD9A	0.462387	6.843522e-7	1.185777e-2	4.743108e-4
26	8070129	8073309	uc003flu		0.461085	7.423131e-7	1.286206e-2	4.946946e-4
27	8070129	8133219			0.459472	8.205990e-7	1.421852e-2	5.266118e-4
28	8070129	8119444	NM_001012426	FOXP4	0.459110	8.392073e-7	1.454094e-2	5.193194e-4
29	8070129	8087806	NM_020418	PCBP4	0.458369	8.785747e-7	1.522306e-2	5.249332e-4
30	8070129	8161026	NM_174923	CCDC107	0.457835	9.079992e-7	1.573290e-2	5.244300e-4
31	8070129	7990652	ENST00000410898		0.457766	9.118671e-7	1.579992e-2	5.096749e-4
32	8070129	7921930	ENST00000363457		0.456916	9.609111e-7	1.664971e-2	5.203033e-4
33	8070129	8071466	NM_006767	LZTR1	0.456312	9.972476e-7	1.727931e-2	5.236154e-4
34	8070129	7940781	NM_201428	RTN3	-0.455955	1.019282e-6	1.766110e-2	5.194441e-4
35	8070129	8019635			0.455477	1.049586e-6	1.818618e-2	5.196052e-4
36	8070129	8019631			0.455477	1.049586e-6	1.818618e-2	5.051717e-4
37	8070129	8019707			0.455477	1.049586e-6	1.818618e-2	4.915185e-4
38	8070129	8019705			0.455477	1.049586e-6	1.818618e-2	4.785838e-4
39	8070129	8019703			0.455477	1.049586e-6	1.818618e-2	4.663124e-4
40	8070129	8019641			0.455477	1.049586e-6	1.818618e-2	4.546546e-4
41	8070129	8019639			0.455477	1.049586e-6	1.818618e-2	4.435654e-4
42	8070129	8019637			0.455477	1.049586e-6	1.818618e-2	4.330043e-4
43	8070129	8019633			0.455477	1.049586e-6	1.818618e-2	4.229345e-4
44	8070129	7899990	NM_014284	NCDN	0.454563	1.109870e-6	1.923072e-2	4.370618e-4
45	8070129	7984684	ENST00000411240		0.454108	1.141155e-6	1.977280e-2	4.393956e-4
46	8070129	7990307	ENST00000411240		0.454108	1.141155e-6	1.977280e-2	4.298435e-4
47	8070129	7984987	ENST00000411240		0.454108	1.141155e-6	1.977280e-2	4.206979e-4
48	8070129	7984983	ENST00000411240		0.454108	1.141155e-6	1.977280e-2	4.119333e-4
49	8070129	7948836	NM_001080501	TMEM223	0.454080	1.143095e-6	1.980640e-2	4.042123e-4
50	8070129	8123598	NM_030666	SERPINB1	-0.453728	1.167835e-6	2.023507e-2	4.047015e-4

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation