[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
358	7951859	NM_000482	APOA4		apolipoprotein A-IV
5568	8077192	NM_000482	APOA4		apolipoprotein A-IV

Fetching correlation data, please wait...
Getting list of correlations for id 358.
Getting list of p-values for id 358.
1 of 2 done.
Getting list of correlations for id 5568.
Getting list of p-values for id 5568.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.204 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7951859	8077192	NM_000482	APOA4	0.961112	2.242385e-59	7.770762e-55	7.770762e-55
2	8077192	7951859	NM_000482	APOA4	0.961112	2.242385e-59	7.770762e-55	3.885381e-55
3	7951859	7913450	NM_005529	HSPG2	0.815885	2.991949e-26	1.036830e-21	3.456100e-22
4	8077192	7913450	NM_005529	HSPG2	0.803469	6.145132e-25	2.129534e-20	5.323835e-21
5	7951859	8137783	NM_001097620	TMEM184A	0.802628	7.482034e-25	2.592824e-20	5.185648e-21
6	7951859	7945712	NM_199292	TH	0.799703	1.473437e-24	5.106048e-20	8.510081e-21
7	7951859	8156415	NM_006648	WNK2	0.795417	3.897412e-24	1.350609e-19	1.929442e-20
8	7951859	7952227	NM_015645	C1QTNF5	0.788239	1.889414e-23	6.547574e-19	8.184467e-20
9	8077192	8156415	NM_006648	WNK2	0.788010	1.984723e-23	6.877858e-19	7.642065e-20
10	8077192	8137783	NM_001097620	TMEM184A	0.784842	3.904600e-23	1.353100e-18	1.353100e-19
11	7951859	7997801	NM_013278	IL17C	0.783943	4.720862e-23	1.635968e-18	1.487243e-19
12	8077192	8120698	NM_133645	MTO1	-0.783875	4.789040e-23	1.659594e-18	1.382995e-19
13	8077192	8096556	NM_015143	METAP1	-0.783866	4.797751e-23	1.662613e-18	1.278933e-19
14	7951859	7987701	NM_016642	SPTBN5	0.782767	6.043345e-23	2.094261e-18	1.495901e-19
15	7951859	8096556	NM_015143	METAP1	-0.782319	6.637211e-23	2.300059e-18	1.533373e-19
16	7951859	7927307	NM_001630	ANXA8L2	0.781735	7.497466e-23	2.598172e-18	1.623857e-19
17	7951859	7927367	NM_001040084	ANXA8	0.780924	8.873856e-23	3.075146e-18	1.808909e-19
18	8077192	7952227	NM_015645	C1QTNF5	0.777884	1.658806e-22	5.748427e-18	3.193571e-19
19	8077192	7956910	NM_018448	CAND1	-0.776971	1.997776e-22	6.923094e-18	3.643734e-19
20	8077192	8060126	NM_198998	AQP12A	0.776748	2.090421e-22	7.244144e-18	3.622072e-19
21	7951859	8120698	NM_133645	MTO1	-0.775516	2.682027e-22	9.294297e-18	4.425856e-19
22	7951859	8015554	NM_012285	KCNH4	0.775382	2.755117e-22	9.547584e-18	4.339811e-19
23	8077192	8136401	NM_015135	NUP205	-0.775248	2.830788e-22	9.809813e-18	4.265136e-19
24	8077192	8014269	NM_139285	GAS2L2	0.774469	3.310679e-22	1.147283e-17	4.780345e-19
25	7951859	8136401	NM_015135	NUP205	-0.773746	3.826304e-22	1.325967e-17	5.303870e-19
26	7951859	8099926	NM_001100399	PDS5A	-0.773470	4.043259e-22	1.401151e-17	5.389042e-19
27	8077192	8073799	NM_013236	ATXN10	-0.773386	4.111414e-22	1.424769e-17	5.276923e-19
28	8077192	7997801	NM_013278	IL17C	0.772036	5.376205e-22	1.863070e-17	6.653822e-19
29	8077192	8127787	NM_015525	IBTK	-0.771817	5.615374e-22	1.945952e-17	6.710178e-19
30	7951859	7947991	NM_015231	NUP160	-0.771281	6.242168e-22	2.163161e-17	7.210536e-19
31	7951859	8112121	NM_173514	SLC38A9	-0.771056	6.525707e-22	2.261418e-17	7.294898e-19
32	8077192	7936762	NM_001001976	ATE1	-0.770889	6.744554e-22	2.337258e-17	7.303931e-19
33	7951859	7917156	NM_003902	FUBP1	-0.770849	6.796728e-22	2.355338e-17	7.137388e-19
34	7951859	7937560	NM_002457	MUC2	0.770736	6.950120e-22	2.408495e-17	7.083808e-19
35	7951859	8035648	NM_001001524	TM6SF2	0.768601	1.055636e-21	3.658202e-17	1.045201e-18
36	8077192	8099926	NM_001100399	PDS5A	-0.768189	1.143719e-21	3.963443e-17	1.100956e-18
37	7951859	8075016	NM_207644	C22orf36	0.768177	1.146340e-21	3.972528e-17	1.073656e-18
38	7951859	8086222	NM_001099404	SCN5A	0.768102	1.163086e-21	4.030557e-17	1.060673e-18
39	8077192	7977105	NM_152307	TRMT61A	0.767648	1.270203e-21	4.401763e-17	1.128657e-18
40	7951859	7993054	NM_014692	SEC14L5	0.767070	1.420659e-21	4.923151e-17	1.230788e-18
41	7951859	7903239	NM_000028	AGL	-0.766374	1.624581e-21	5.629823e-17	1.373128e-18
42	7951859	7949679	NM_006946	SPTBN2	0.765692	1.852316e-21	6.419016e-17	1.528337e-18
43	8077192	7947991	NM_015231	NUP160	-0.765245	2.017959e-21	6.993035e-17	1.626287e-18
44	7951859	8159624	BC052297	C9orf169	0.765200	2.035250e-21	7.052955e-17	1.602944e-18
45	7951859	8059028	NM_194302	CCDC108	0.765098	2.075525e-21	7.192525e-17	1.598339e-18
46	8077192	8051882	NM_133259	LRPPRC	-0.764305	2.414768e-21	8.368137e-17	1.819160e-18
47	7951859	8060126	NM_198998	AQP12A	0.763913	2.601848e-21	9.016445e-17	1.918393e-18
48	8077192	8049729	NM_198998	AQP12A	0.763794	2.661560e-21	9.223369e-17	1.921535e-18
49	8077192	8034151	NM_020812	DOCK6	0.763778	2.669414e-21	9.250587e-17	1.887875e-18
50	7951859	7910520	NM_014236	GNPAT	-0.763638	2.741357e-21	9.499899e-17	1.899980e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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