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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
3588 7955290 NM_000486 AQP2 link to infopage aquaporin 2 (collecting duct)

Fetching correlation data, please wait...
Getting list of correlations for id 3588.
Getting list of p-values for id 3588.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.139 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 7955290 8034940 NM_000435 NOTCH3 link to infopage 0.764915 2.149408e-21 3.724280e-17 3.724280e-17
2 7955290 7915385 NM_001956 EDN2 link to infopage 0.745964 6.846008e-20 1.186208e-15 5.931039e-16
3 7955290 8049670 NM_002081 GPC1 link to infopage 0.742674 1.210358e-19 2.097187e-15 6.990623e-16
4 7955290 8152782 NM_014846 KIAA0196 link to infopage -0.737391 2.968570e-19 5.143641e-15 1.285910e-15
5 7955290 8069208 NM_030582 COL18A1 link to infopage 0.736180 3.634986e-19 6.298340e-15 1.259668e-15
6 7955290 8163275 NM_001080398 KIAA0368 link to infopage -0.734228 5.027438e-19 8.711041e-15 1.451840e-15
7 7955290 7949015 NM_001144936 C11orf95 link to infopage 0.733712 5.474894e-19 9.486348e-15 1.355193e-15
8 7955290 8061815 NM_182658 C20orf185 link to infopage 0.727543 1.494326e-18 2.589218e-14 3.236522e-15
9 7955290 7945536 NM_016564 CEND1 link to infopage 0.726905 1.655194e-18 2.867954e-14 3.186616e-15
10 7955290 8000903 NM_023931 ZNF747 link to infopage 0.725791 1.977496e-18 3.426407e-14 3.426407e-15
11 7955290 7991939 NM_145294 WDR90 link to infopage 0.724738 2.337848e-18 4.050789e-14 3.682536e-15
12 7955290 7994961 NM_001330 CTF1 link to infopage 0.722385 3.388315e-18 5.870934e-14 4.892445e-15
13 7955290 8098740 NM_033178 DUX4 link to infopage 0.720123 4.824291e-18 8.359049e-14 6.430038e-15
14 7955290 7926565 NM_004641 MLLT10 link to infopage -0.718726 5.989894e-18 1.037869e-13 7.413349e-15
15 7955290 8036252 NM_015526 CLIP3 link to infopage 0.717198 7.578267e-18 1.313086e-13 8.753909e-15
16 7955290 8040045 NM_199235 COLEC11 link to infopage 0.716354 8.625071e-18 1.494466e-13 9.340413e-15
17 7955290 8125383 NM_004557 NOTCH4 link to infopage 0.715443 9.911568e-18 1.717377e-13 1.010222e-14
18 7955290 7963263 ENST00000364083 link to infopage -0.715394 9.985083e-18 1.730115e-13 9.611752e-15
19 7955290 8036270 NM_152658 THAP8 link to infopage 0.713973 1.238968e-17 2.146760e-13 1.129874e-14
20 7955290 8070771 NM_198691 KRTAP10-1 link to infopage 0.713002 1.434771e-17 2.486028e-13 1.243014e-14
21 7955290 7992181 NM_003294 TPSAB1 link to infopage 0.712840 1.470056e-17 2.547167e-13 1.212937e-14
22 7955290 7944285 NM_001655 ARCN1 link to infopage -0.711561 1.781500e-17 3.086805e-13 1.403093e-14
23 7955290 7911435 NM_001014980 FAM132A link to infopage 0.708731 2.715404e-17 4.704981e-13 2.045644e-14
24 7955290 8015214 NM_033184 KRTAP2-4 link to infopage 0.708659 2.744380e-17 4.755187e-13 1.981328e-14
25 7955290 8019574 NM_033184 KRTAP2-4 link to infopage 0.708659 2.744380e-17 4.755187e-13 1.902075e-14
26 7955290 8024048 NM_002777 PRTN3 link to infopage 0.708654 2.746521e-17 4.758896e-13 1.830345e-14
27 7955290 8157700 NM_012197 RABGAP1 link to infopage -0.707421 3.294825e-17 5.708944e-13 2.114424e-14
28 7955290 8137330 ENST00000356058 link to infopage 0.706760 3.631023e-17 6.291474e-13 2.246955e-14
29 7955290 8131056 NM_017781 CYP2W1 link to infopage 0.706466 3.790858e-17 6.568419e-13 2.264972e-14
30 7955290 8060094 NM_148961 OTOS link to infopage 0.706227 3.926324e-17 6.803142e-13 2.267714e-14
31 7955290 8128650 NM_007214 SEC63 link to infopage -0.706003 4.056766e-17 7.029158e-13 2.267470e-14
32 7955290 8065344 NM_021784 FOXA2 link to infopage 0.705661 4.264838e-17 7.389685e-13 2.309277e-14
33 7955290 8065327 NM_033176 NKX2-4 link to infopage 0.705660 4.265608e-17 7.391018e-13 2.239703e-14
34 7955290 7914764 NM_007167 ZMYM6 link to infopage -0.705589 4.309939e-17 7.467831e-13 2.196421e-14
35 7955290 7978093 NM_032452 JPH4 link to infopage 0.705410 4.424534e-17 7.666391e-13 2.190397e-14
36 7955290 8064242 NR_027686 NCRNA00176 link to infopage 0.705304 4.493562e-17 7.785995e-13 2.162777e-14
37 7955290 8133504 NM_032999 GTF2I link to infopage -0.705281 4.508168e-17 7.811303e-13 2.111163e-14
38 7955290 8015208 NM_001123387 KRTAP2-1 link to infopage 0.705201 4.561308e-17 7.903379e-13 2.079837e-14
39 7955290 8046276 NM_001003845 SP5 link to infopage 0.705027 4.678852e-17 8.107047e-13 2.078730e-14
40 7955290 8098732 NM_033178 DUX4 link to infopage 0.704764 4.861661e-17 8.423799e-13 2.105950e-14
41 7955290 7968931 NM_031431 COG3 link to infopage -0.704448 5.089723e-17 8.818963e-13 2.150967e-14
42 7955290 7970033 NM_001846 COL4A2 link to infopage 0.704422 5.109300e-17 8.852885e-13 2.107830e-14
43 7955290 8063796 NM_001794 CDH4 link to infopage 0.704284 5.213018e-17 9.032597e-13 2.100604e-14
44 7955290 8062948 NM_014276 RBPJL link to infopage 0.703952 5.470313e-17 9.478412e-13 2.154185e-14
45 7955290 8038139 NM_145807 NTN5 link to infopage 0.703633 5.729073e-17 9.926766e-13 2.205948e-14
46 7955290 8112592 NM_004472 FOXD1 link to infopage 0.703538 5.808668e-17 1.006468e-12 2.187974e-14
47 7955290 7941469 NM_152762 TSGA10IP link to infopage 0.703337 5.980155e-17 1.036181e-12 2.204641e-14
48 7955290 8093130 NM_152617 RNF168 link to infopage -0.702868 6.399764e-17 1.108887e-12 2.310181e-14
49 7955290 8119918 NM_153246 C6orf223 link to infopage 0.702532 6.717541e-17 1.163948e-12 2.375405e-14
50 7955290 8004763 NM_000180 GUCY2D link to infopage 0.702428 6.819882e-17 1.181681e-12 2.363362e-14

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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