[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
1800	8118669	NM_002263	KIFC1		kinesin family member C1
1830	8179564	NM_002263	KIFC1		kinesin family member C1

Fetching correlation data, please wait...
Getting list of correlations for id 1800.
Getting list of p-values for id 1800.
1 of 2 done.
Getting list of correlations for id 1830.
Getting list of p-values for id 1830.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.230 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8179564	8118669	NM_002263	KIFC1	0.913867	4.097338e-42	1.419892e-37	1.419892e-37
2	8118669	8179564	NM_002263	KIFC1	0.913867	4.097338e-42	1.419892e-37	7.099458e-38
3	8118669	8148333	NM_015137	EFR3A	-0.715812	9.369168e-18	3.246791e-13	1.082264e-13
4	8118669	8021199	NM_002747	MAPK4	0.707873	3.082624e-17	1.068252e-12	2.670631e-13
5	8118669	7903321	NM_001130841	RTCD1	-0.697846	1.312201e-16	4.547302e-12	9.094603e-13
6	8118669	8039010	NM_018260	ZNF701	-0.696644	1.554793e-16	5.387980e-12	8.979967e-13
7	8118669	8129181	NM_020399	GOPC	-0.693180	2.523420e-16	8.744661e-12	1.249237e-12
8	8118669	8043820	NM_014044	UNC50	-0.690901	3.457322e-16	1.198100e-11	1.497626e-12
9	8118669	8170326	NM_002024	FMR1	-0.690545	3.630510e-16	1.258117e-11	1.397908e-12
10	8118669	8063283	NM_001316	CSE1L	-0.690488	3.659279e-16	1.268087e-11	1.268087e-12
11	8118669	7934852	NM_005271	GLUD1	-0.685872	6.856720e-16	2.376128e-11	2.160116e-12
12	8118669	8092564	NM_004593	TRA2B	-0.682633	1.058138e-15	3.666870e-11	3.055725e-12
13	8118669	7912591	NM_001012277	PRAMEF7	0.682270	1.110452e-15	3.848161e-11	2.960124e-12
14	8118669	7897991	NM_001012277	PRAMEF7	0.682270	1.110452e-15	3.848161e-11	2.748687e-12
15	8118669	7912606	NM_001012277	PRAMEF7	0.682270	1.110452e-15	3.848161e-11	2.565441e-12
16	8118669	8130087	NM_139126	PPIL4	-0.678522	1.820691e-15	6.309424e-11	3.943390e-12
17	8118669	8072153	NM_173510	CCDC117	-0.676228	2.455063e-15	8.507774e-11	5.004573e-12
18	8118669	8101013	NM_015436	RCHY1	-0.673876	3.326625e-15	1.152808e-10	6.404492e-12
19	8118669	8139706	NM_014302	SEC61G	-0.672923	3.759522e-15	1.302825e-10	6.856972e-12
20	8118669	7943580	NM_003478	CUL5	-0.672476	3.980872e-15	1.379531e-10	6.897657e-12
21	8118669	8165038	NM_001012415	SOHLH1	0.671985	4.238769e-15	1.468903e-10	6.994776e-12
22	8118669	8023735	NM_019022	TMX3	-0.671815	4.331289e-15	1.500965e-10	6.822568e-12
23	8118669	7954613	NM_018318	CCDC91	-0.671132	4.724901e-15	1.637367e-10	7.118988e-12
24	8118669	8154531	NM_017925	DENND4C	-0.671037	4.782356e-15	1.657278e-10	6.905324e-12
25	8118669	7983679	NM_007347	AP4E1	-0.669963	5.480629e-15	1.899257e-10	7.597029e-12
26	8118669	7906852	NM_175866	UHMK1	-0.669542	5.781107e-15	2.003385e-10	7.705327e-12
27	8118669	8137244	NM_018326	GIMAP4	-0.669033	6.164974e-15	2.136410e-10	7.912630e-12
28	8118669	7970546	NM_152726	EFHA1	-0.668099	6.934014e-15	2.402913e-10	8.581833e-12
29	8118669	8132667	NM_021116	ADCY1	0.667898	7.111530e-15	2.464430e-10	8.498033e-12
30	8118669	7975068	NM_001123329	ZBTB1	-0.666616	8.351199e-15	2.894025e-10	9.646749e-12
31	8118669	7917120	NM_015017	USP33	-0.666223	8.771615e-15	3.039715e-10	9.805534e-12
32	8118669	8075118	NM_001887	CRYBB1	0.665706	9.355452e-15	3.242038e-10	1.013137e-11
33	8118669	8121734	NM_014034	ASF1A	-0.664613	1.071763e-14	3.714086e-10	1.125481e-11
34	8118669	7978570	NM_021249	SNX6	-0.664497	1.087288e-14	3.767886e-10	1.108202e-11
35	8118669	8119080	NM_003017	SRSF3	-0.663927	1.166768e-14	4.043319e-10	1.155234e-11
36	8118669	8169519	NM_019045	WDR44	-0.663359	1.251669e-14	4.337534e-10	1.204870e-11
37	8118669	8088526	NM_025075	THOC7	-0.663239	1.270287e-14	4.402051e-10	1.189743e-11
38	8118669	8159616	NM_001144026	NDOR1	0.662243	1.436200e-14	4.977008e-10	1.309739e-11
39	8118669	8089234	NM_014415	ZBTB11	-0.661939	1.490871e-14	5.166463e-10	1.324734e-11
40	8118669	7903239	NM_000028	AGL	-0.661904	1.497205e-14	5.188413e-10	1.297103e-11
41	8118669	8107458	NM_016144	COMMD10	-0.661531	1.567240e-14	5.431112e-10	1.324661e-11
42	8118669	8109802	NM_002887	RARS	-0.660952	1.682596e-14	5.830868e-10	1.388302e-11
43	8118669	7903519	NM_018061	PRPF38B	-0.660711	1.732879e-14	6.005120e-10	1.396540e-11
44	8179564	8159616	NM_001144026	NDOR1	0.660373	1.805859e-14	6.258025e-10	1.422278e-11
45	8118669	7996393	NM_001755	CBFB	-0.659922	1.907999e-14	6.611980e-10	1.469329e-11
46	8118669	8132943	NM_001762	CCT6A	-0.659783	1.940465e-14	6.724486e-10	1.461845e-11
47	8118669	8088219	NM_001112736	C3orf63	-0.659585	1.987910e-14	6.888903e-10	1.465724e-11
48	8118669	8025621	NM_003259	ICAM5	0.658540	2.256874e-14	7.820972e-10	1.629369e-11
49	8118669	7942553	NM_014752	SPCS2	-0.658539	2.257358e-14	7.822649e-10	1.596459e-11
50	8118669	8064059	NM_020882	COL20A1	0.658490	2.270788e-14	7.869190e-10	1.573838e-11

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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