[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3719	7942261	NM_005553	KRTAP5-9		keratin associated protein 5-9

Fetching correlation data, please wait...
Getting list of correlations for id 3719.
Getting list of p-values for id 3719.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.131 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7942261	8162247	AF289567		0.668632	6.484363e-15	1.123545e-10	1.123545e-10
2	7942261	8094743	NM_004310	RHOH	-0.632678	4.483305e-13	7.768222e-9	3.884111e-9
3	7942261	8070786	NM_198688	KRTAP10-6	0.632436	4.604263e-13	7.977807e-9	2.659269e-9
4	7942261	8065566	NM_001037500	DEFB124	0.624107	1.136110e-12	1.968538e-8	4.921346e-9
5	7942261	8163086	NM_032012	C9orf5	-0.623711	1.185173e-12	2.053550e-8	4.107100e-9
6	7942261	7947138	NM_022725	FANCF	-0.620696	1.632008e-12	2.827780e-8	4.712966e-9
7	7942261	8060765	NM_012409	PRND	0.617289	2.333038e-12	4.042455e-8	5.774935e-9
8	7942261	8075705			0.615544	2.796846e-12	4.846095e-8	6.057619e-9
9	7942261	8154838	ENST00000331828		0.612881	3.680894e-12	6.377885e-8	7.086539e-9
10	7942261	8013327	AK026312	LOC79999	0.612572	3.799821e-12	6.583949e-8	6.583949e-9
11	7942261	8005555	AK026312	LOC79999	0.612572	3.799821e-12	6.583949e-8	5.985408e-9
12	7942261	8049729	NM_198998	AQP12A	0.608104	5.986307e-12	1.037247e-7	8.643728e-9
13	7942261	7999291	NM_152459	C16orf89	0.606464	7.060879e-12	1.223438e-7	9.411065e-9
14	7942261	8032576	NM_198969	AES	-0.603387	9.600864e-12	1.663542e-7	1.188244e-8
15	7942261	8096002	ENST00000459422		0.601931	1.108999e-11	1.921563e-7	1.281042e-8
16	7942261	8061881	ENST00000453181		0.600731	1.248315e-11	2.162956e-7	1.351847e-8
17	7942261	7922326	hsa-mir-214		0.598321	1.580860e-11	2.739157e-7	1.611269e-8
18	7942261	7924682	NM_003240	LEFTY2	0.595672	2.044681e-11	3.542819e-7	1.968233e-8
19	7942261	8055139	AK056598	LOC151121	0.595599	2.059125e-11	3.567847e-7	1.877814e-8
20	7942261	8082163	ENST00000384275		0.591781	2.971145e-11	5.148103e-7	2.574051e-8
21	7942261	8114546	ENST00000384293		0.590956	3.214186e-11	5.569220e-7	2.652010e-8
22	7942261	7960177	NM_003044	SLC6A12	0.590599	3.325100e-11	5.761401e-7	2.618819e-8
23	7942261	8072272	ENST00000364106		0.589902	3.552486e-11	6.155393e-7	2.676258e-8
24	7942261	8163013	ENST00000410626		0.589728	3.611615e-11	6.257846e-7	2.607436e-8
25	7942261	8139367	NM_013389	NPC1L1	0.589538	3.677188e-11	6.371464e-7	2.548586e-8
26	7942261	7945648	NM_001004325	KRTAP5-2	0.585311	5.470929e-11	9.479479e-7	3.645954e-8
27	7942261	7981078	NM_001080451	SERPINA11	0.585082	5.589114e-11	9.684258e-7	3.586762e-8
28	7942261	8103906	AK097110	LOC728175	0.584393	5.959562e-11	1.032613e-6	3.687905e-8
29	7942261	8063634	ENST00000419204		0.584235	6.047830e-11	1.047908e-6	3.613474e-8
30	7942261	8144685			0.582980	6.794968e-11	1.177364e-6	3.924547e-8
31	7942261	8015240	NM_033187	KRTAP4-3	0.582503	7.101600e-11	1.230494e-6	3.969336e-8
32	7942261	8045229	NM_032995	ARHGEF4	0.580690	8.392805e-11	1.454221e-6	4.544442e-8
33	7942261	7967486	NM_025140	CCDC92	-0.580660	8.415801e-11	1.458206e-6	4.418806e-8
34	7942261	7920191	NM_178431	LCE3A	0.578119	1.061794e-10	1.839770e-6	5.411088e-8
35	7942261	8019588	NM_031957	KRTAP1-5	0.577511	1.122230e-10	1.944488e-6	5.555680e-8
36	7942261	8015179	NM_031957	KRTAP1-5	0.577511	1.122230e-10	1.944488e-6	5.401355e-8
37	7942261	7931081	NM_021622	PLEKHA1	-0.577345	1.139197e-10	1.973886e-6	5.334827e-8
38	7942261	8101757	NM_198281	GPRIN3	-0.577083	1.166713e-10	2.021563e-6	5.319904e-8
39	7942261	8010768			0.576957	1.180095e-10	2.044751e-6	5.242951e-8
40	7942261	8005141	NM_017775	TTC19	-0.576269	1.255958e-10	2.176199e-6	5.440497e-8
41	7942261	8132964	NM_015411	SUMF2	-0.574788	1.435671e-10	2.487587e-6	6.067286e-8
42	7942261	8167573	NM_001127345	GAGE12B	0.573810	1.567625e-10	2.716223e-6	6.467198e-8
43	7942261	7964828	GENSCAN00000052941		-0.573258	1.647183e-10	2.854073e-6	6.637380e-8
44	7942261	7999727	NM_001171	ABCC6	0.572783	1.718758e-10	2.978093e-6	6.768393e-8
45	7942261	8036777	NM_001436	FBL	-0.572586	1.749350e-10	3.031098e-6	6.735774e-8
46	7942261	7999433	ENST00000390926		0.572567	1.752297e-10	3.036205e-6	6.600445e-8
47	7942261	8129095	ENST00000435100		-0.572430	1.773859e-10	3.073566e-6	6.539502e-8
48	7942261	7923528	NM_002479	MYOG	0.572351	1.786512e-10	3.095489e-6	6.448936e-8
49	7942261	8018164	BC093631	KIF19	0.571528	1.922535e-10	3.331177e-6	6.798321e-8
50	7942261	8088425	NM_138805	FAM3D	0.571477	1.931324e-10	3.346405e-6	6.692810e-8

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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