[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6800	8037991	NM_000234	LIG1		ligase I, DNA, ATP-dependent

Fetching correlation data, please wait...
Getting list of correlations for id 6800.
Getting list of p-values for id 6800.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.118 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8037991	8158123	NM_004957	FPGS	0.576232	1.260205e-10	2.183557e-6	2.183557e-6
2	8037991	7983922			-0.570252	2.153520e-10	3.731405e-6	1.865702e-6
3	8037991	8032076	NM_194460	RNF126	0.561261	4.724097e-10	8.185443e-6	2.728481e-6
4	8037991	8025563	NM_001040664	PPAN-P2RY11	0.558887	5.790977e-10	1.003403e-5	2.508507e-6
5	8037991	8104944	NM_015384	NIPBL	-0.556244	7.250084e-10	1.256222e-5	2.512444e-6
6	8037991	7922504	NM_022457	RFWD2	-0.553402	9.211908e-10	1.596147e-5	2.660245e-6
7	8037991	7954810	NM_198578	LRRK2	-0.551840	1.049775e-9	1.818945e-5	2.598493e-6
8	8037991	8102751	NM_144643	SCLT1	-0.551513	1.078729e-9	1.869113e-5	2.336392e-6
9	8037991	8162147	NM_024617	ZCCHC6	-0.547200	1.541501e-9	2.670959e-5	2.967733e-6
10	8037991	8074773	NM_001017964	YDJC	0.546877	1.582954e-9	2.742784e-5	2.742784e-6
11	8037991	8148358	NM_016018	PHF20L1	-0.546759	1.598311e-9	2.769394e-5	2.517631e-6
12	8037991	8120022	NM_001253	CDC5L	-0.544705	1.890661e-9	3.275949e-5	2.729957e-6
13	8037991	8092933	NM_012287	ACAP2	-0.543847	2.027425e-9	3.512919e-5	2.702246e-6
14	8037991	7965359	NM_001001323	ATP2B1	-0.543781	2.038393e-9	3.531924e-5	2.522803e-6
15	8037991	8033025	NM_020175	DUS3L	0.541711	2.410258e-9	4.176255e-5	2.784170e-6
16	8037991	7936596	NM_153810	C10orf46	-0.540453	2.667392e-9	4.621790e-5	2.888619e-6
17	8037991	7954711	NM_018169	C12orf35	-0.540206	2.720779e-9	4.714294e-5	2.773114e-6
18	8037991	8026361	ENST00000410914		0.540188	2.724841e-9	4.721332e-5	2.622962e-6
19	8037991	8105191	NM_024615	PARP8	-0.537965	3.255225e-9	5.640329e-5	2.968594e-6
20	8037991	7908553	NM_002838	PTPRC	-0.535721	3.890311e-9	6.740742e-5	3.370371e-6
21	8037991	7996608	NM_001013838	RLTPR	0.535544	3.945227e-9	6.835894e-5	3.255188e-6
22	8037991	7952984	ENST00000408512		-0.535290	4.025222e-9	6.974503e-5	3.170229e-6
23	8037991	8056102	NM_014880	CD302	-0.535185	4.058922e-9	7.032894e-5	3.057780e-6
24	8037991	7994345	NM_001024401	SBK1	0.532856	4.875288e-9	8.447412e-5	3.519755e-6
25	8037991	8089928	ENST00000410125		-0.530204	5.997070e-9	1.039112e-4	4.156449e-6
26	8037991	8055606	NM_001006636	GTDC1	-0.529977	6.103758e-9	1.057598e-4	4.067685e-6
27	8037991	8014282	NM_024302	MMP28	0.529625	6.272937e-9	1.086912e-4	4.025599e-6
28	8037991	8145175	NM_176871	PDLIM2	0.528857	6.657476e-9	1.153541e-4	4.119789e-6
29	8037991	8014063	NM_006495	EVI2B	-0.528637	6.771943e-9	1.173375e-4	4.046119e-6
30	8037991	8098725	NM_033178	DUX4	0.526386	8.054367e-9	1.395580e-4	4.651934e-6
31	8037991	8111739	NM_001465	FYB	-0.525434	8.664135e-9	1.501235e-4	4.842693e-6
32	8037991	7917240	NM_004388	CTBS	-0.525417	8.675708e-9	1.503240e-4	4.697625e-6
33	8037991	7974851	NM_001530	HIF1A	-0.524125	9.575148e-9	1.659086e-4	5.027533e-6
34	8037991	8122672	NM_015093	TAB2	-0.524125	9.575750e-9	1.659190e-4	4.879971e-6
35	8037991	8056060	NM_013450	BAZ2B	-0.522241	1.104939e-8	1.914528e-4	5.470081e-6
36	8037991	7988789	NM_015263	DMXL2	-0.521960	1.128710e-8	1.955716e-4	5.432543e-6
37	8037991	8049919	NM_152783	D2HGDH	0.521731	1.148421e-8	1.989868e-4	5.378022e-6
38	8037991	8019885	NM_015295	SMCHD1	-0.521464	1.171806e-8	2.030389e-4	5.343129e-6
39	8037991	7946516	NM_030962	SBF2	-0.521428	1.175011e-8	2.035941e-4	5.220362e-6
40	8037991	7969796	NM_004800	TM9SF2	-0.520890	1.223693e-8	2.120293e-4	5.300732e-6
41	8037991	7965723	NM_015054	UHRF1BP1L	-0.520437	1.266230e-8	2.193996e-4	5.351209e-6
42	8037991	8006239	NM_001042492	NF1	-0.519934	1.315091e-8	2.278658e-4	5.425376e-6
43	8037991	7912040	NM_148965	TNFRSF25	0.519322	1.376966e-8	2.385870e-4	5.548534e-6
44	8037991	8058024	NM_012433	SF3B1	-0.518296	1.487018e-8	2.576557e-4	5.855810e-6
45	8037991	8027352			-0.518028	1.517095e-8	2.628671e-4	5.841492e-6
46	8037991	7966234	NM_021625	TRPV4	0.517733	1.550884e-8	2.687217e-4	5.841776e-6
47	8037991	8151334	NM_005098	MSC	0.517712	1.553355e-8	2.691499e-4	5.726593e-6
48	8037991	7912537	NM_004753	DHRS3	0.517613	1.564789e-8	2.711309e-4	5.648561e-6
49	8037991	7941148	NM_003273	TM7SF2	0.517085	1.627720e-8	2.820351e-4	5.755818e-6
50	8037991	8113358	NM_005668	ST8SIA4	-0.516610	1.686322e-8	2.921890e-4	5.843779e-6

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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