[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1634	8151334	NM_005098	MSC		musculin

Fetching correlation data, please wait...
Getting list of correlations for id 1634.
Getting list of p-values for id 1634.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.152 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8151334	8098512	NM_021942	C4orf41	-0.691628	3.127971e-16	5.419835e-12	5.419835e-12
2	8151334	8097867	NM_015196	KIAA0922	-0.673468	3.505519e-15	6.074014e-11	3.037007e-11
3	8151334	8150491	NM_001099412	MYST3	-0.668685	6.441465e-15	1.116113e-10	3.720376e-11
4	8151334	8067011	NM_015339	ADNP	-0.668191	6.854725e-15	1.187718e-10	2.969295e-11
5	8151334	7950248	NM_014824	FCHSD2	-0.667932	7.081223e-15	1.226964e-10	2.453927e-11
6	8151334	8080685	NM_007159	SLMAP	-0.667394	7.575649e-15	1.312633e-10	2.187721e-11
7	8151334	7920766	NM_018489	ASH1L	-0.667214	7.748589e-15	1.342598e-10	1.917997e-11
8	8151334	8135277	NM_182931	MLL5	-0.667051	7.909284e-15	1.370442e-10	1.713052e-11
9	8151334	8073214	NM_001024843	TNRC6B	-0.665184	9.983588e-15	1.729856e-10	1.922063e-11
10	8151334	8104944	NM_015384	NIPBL	-0.665108	1.007848e-14	1.746298e-10	1.746298e-11
11	8151334	8024048	NM_002777	PRTN3	0.663756	1.191713e-14	2.064881e-10	1.877164e-11
12	8151334	7989323	NM_004330	BNIP2	-0.663354	1.252499e-14	2.170205e-10	1.808504e-11
13	8151334	7981217	NM_018036	ATG2B	-0.663064	1.298000e-14	2.249044e-10	1.730034e-11
14	8151334	7962085	NM_006390	IPO8	-0.662314	1.423703e-14	2.466850e-10	1.762036e-11
15	8151334	7964937	NM_144982	ZFC3H1	-0.659433	2.024976e-14	3.508677e-10	2.339118e-11
16	8151334	8151149	NM_006421	ARFGEF1	-0.659289	2.060714e-14	3.570600e-10	2.231625e-11
17	8151334	7918725	NM_015906	TRIM33	-0.658273	2.331230e-14	4.039322e-10	2.376072e-11
18	8151334	7899284	NM_001013642	TRNP1	0.658082	2.385664e-14	4.133640e-10	2.296467e-11
19	8151334	7922889	NM_006469	IVNS1ABP	-0.656687	2.823197e-14	4.891754e-10	2.574607e-11
20	8151334	8100902	NM_032217	ANKRD17	-0.656259	2.972445e-14	5.150356e-10	2.575178e-11
21	8151334	7936596	NM_153810	C10orf46	-0.655943	3.087395e-14	5.349530e-10	2.547395e-11
22	8151334	7950921	NM_001143831	GRM5	0.655672	3.189344e-14	5.526176e-10	2.511898e-11
23	8151334	8038804	NM_152353	CLDND2	0.655449	3.275662e-14	5.675740e-10	2.467713e-11
24	8151334	7914084	NM_207397	CD164L2	0.655101	3.415357e-14	5.917788e-10	2.465745e-11
25	8151334	8122672	NM_015093	TAB2	-0.654608	3.622655e-14	6.276974e-10	2.510789e-11
26	8151334	7966234	NM_021625	TRPV4	0.652743	4.523134e-14	7.837235e-10	3.014321e-11
27	8151334	8137537	NM_001427	EN2	0.652484	4.664078e-14	8.081447e-10	2.993129e-11
28	8151334	8120441	NM_015153	PHF3	-0.652334	4.747344e-14	8.225724e-10	2.937759e-11
29	8151334	8052443	NM_014709	USP34	-0.652205	4.820654e-14	8.352747e-10	2.880258e-11
30	8151334	7974851	NM_001530	HIF1A	-0.652165	4.843285e-14	8.391960e-10	2.797320e-11
31	8151334	7955019	NM_152641	ARID2	-0.651229	5.409723e-14	9.373428e-10	3.023686e-11
32	8151334	8064031	NM_139317	BIRC7	0.650590	5.833037e-14	1.010690e-9	3.158407e-11
33	8151334	7945445	BC039077	C11orf35	0.650188	6.115109e-14	1.059565e-9	3.210803e-11
34	8151334	8093807	NM_173660	DOK7	0.650058	6.209526e-14	1.075925e-9	3.164484e-11
35	8151334	8006239	NM_001042492	NF1	-0.649660	6.506374e-14	1.127359e-9	3.221027e-11
36	8151334	7987048	NM_017762	MTMR10	-0.649617	6.539034e-14	1.133018e-9	3.147274e-11
37	8151334	8113469	NM_014819	PJA2	-0.647679	8.200642e-14	1.420925e-9	3.840338e-11
38	8151334	8068551	NM_101395	DYRK1A	-0.647545	8.329385e-14	1.443232e-9	3.797980e-11
39	8151334	8133704	NM_001110199	SRRM3	0.647084	8.787778e-14	1.522658e-9	3.904252e-11
40	8151334	8166956	NM_021140	KDM6A	-0.647080	8.791440e-14	1.523293e-9	3.808232e-11
41	8151334	7908637	NM_005298	GPR25	0.646955	8.920655e-14	1.545682e-9	3.769956e-11
42	8151334	7977693	NM_020920	CHD8	-0.646644	9.248513e-14	1.602490e-9	3.815452e-11
43	8151334	8010719	NM_144999	LRRC45	0.645974	9.993827e-14	1.731630e-9	4.027048e-11
44	8151334	8079021	NM_001904	CTNNB1	-0.645073	1.108962e-13	1.921499e-9	4.367042e-11
45	8151334	8008493	NM_016424	LUC7L3	-0.644642	1.165400e-13	2.019289e-9	4.487308e-11
46	8151334	7987892	NM_022473	ZFP106	-0.644460	1.190127e-13	2.062133e-9	4.482899e-11
47	8151334	7994161	NM_006910	RBBP6	-0.644295	1.212940e-13	2.101661e-9	4.471619e-11
48	8151334	8105436	NM_005921	MAP3K1	-0.644197	1.226611e-13	2.125348e-9	4.427808e-11
49	8151334	7984353	NR_027654	SMAD6	0.644163	1.231494e-13	2.133809e-9	4.354713e-11
50	8151334	8086150	NM_006309	LRRFIP2	-0.644050	1.247531e-13	2.161597e-9	4.323193e-11

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation