[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3806	8009844	NM_001031803	LLGL2		lethal giant larvae homolog 2 (Drosophila)

Fetching correlation data, please wait...
Getting list of correlations for id 3806.
Getting list of p-values for id 3806.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.139 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8009844	8125731	NM_005453	ZBTB22	0.672287	4.077994e-15	7.065940e-11	7.065940e-11
2	8009844	8032682	NM_139355	MATK	0.664087	1.143842e-14	1.981935e-10	9.909677e-11
3	8009844	8032076	NM_194460	RNF126	0.663147	1.284762e-14	2.226107e-10	7.420356e-11
4	8009844	8157324	NM_144488	RGS3	0.662607	1.373324e-14	2.379558e-10	5.948894e-11
5	8009844	8038804	NM_152353	CLDND2	0.660841	1.705499e-14	2.955118e-10	5.910235e-11
6	8009844	8122672	NM_015093	TAB2	-0.659976	1.895437e-14	3.284224e-10	5.473706e-11
7	8009844	7945539	NM_024698	SLC25A22	0.654311	3.753185e-14	6.503143e-10	9.290204e-11
8	8009844	8024347	NM_079834	SCAMP4	0.650446	5.932830e-14	1.027982e-9	1.284977e-10
9	8009844	7952893	BC024764	IQSEC3	0.647566	8.308990e-14	1.439699e-9	1.599665e-10
10	8009844	8084219	NM_017644	KLHL24	-0.645276	1.083363e-13	1.877144e-9	1.877144e-10
11	8009844	8090639	NM_014602	PIK3R4	-0.643267	1.364770e-13	2.364736e-9	2.149760e-10
12	8009844	7941350	NM_032223	PCNXL3	0.642456	1.497345e-13	2.594449e-9	2.162041e-10
13	8009844	8064042	NM_175609	ARFGAP1	0.641799	1.613738e-13	2.796124e-9	2.150865e-10
14	8009844	8087691	NM_001005505	CACNA2D2	0.638930	2.233696e-13	3.870325e-9	2.764518e-10
15	8009844	7918474	NM_178454	DRAM2	-0.638198	2.425422e-13	4.202528e-9	2.801686e-10
16	8009844	7996064	NM_153837	GPR114	0.636874	2.813805e-13	4.875480e-9	3.047175e-10
17	8009844	8039440	NM_012267	HSPBP1	0.636700	2.869014e-13	4.971141e-9	2.924200e-10
18	8009844	8177901	NM_020442	VARS2	0.636606	2.899379e-13	5.023753e-9	2.790974e-10
19	8009844	8009832	NM_207346	TSEN54	0.636598	2.901992e-13	5.028281e-9	2.646464e-10
20	8009844	8178988	NM_005453	ZBTB22	0.635428	3.306406e-13	5.729010e-9	2.864505e-10
21	8009844	7949645	NM_207340	ZDHHC24	0.634413	3.700982e-13	6.412691e-9	3.053662e-10
22	8009844	8025328	NM_001159944	EVI5L	0.634112	3.826337e-13	6.629894e-9	3.013588e-10
23	8009844	8156295	NM_024077	SECISBP2	-0.633645	4.029361e-13	6.981673e-9	3.035510e-10
24	8009844	7922646	NM_022347	TOR1AIP2	-0.633523	4.084053e-13	7.076438e-9	2.948516e-10
25	8009844	8113469	NM_014819	PJA2	-0.632629	4.507493e-13	7.810133e-9	3.124053e-10
26	8009844	7908816	NM_001017403	LGR6	0.631478	5.115337e-13	8.863344e-9	3.408978e-10
27	8009844	8097867	NM_015196	KIAA0922	-0.630937	5.428004e-13	9.405103e-9	3.483372e-10
28	8009844	8067743	NM_025224	ZBTB46	0.628700	6.927160e-13	1.200269e-8	4.286675e-10
29	8009844	8158009	NM_014580	SLC2A8	0.627802	7.636011e-13	1.323092e-8	4.562385e-10
30	8009844	7914084	NM_207397	CD164L2	0.627638	7.772576e-13	1.346754e-8	4.489181e-10
31	8009844	7977418	NM_001134875	C14orf80	0.627510	7.880831e-13	1.365512e-8	4.404876e-10
32	8009844	8055465	NM_001008540	CXCR4	-0.626375	8.907428e-13	1.543390e-8	4.823094e-10
33	8009844	8038093	NM_001080434	LMTK3	0.626109	9.166094e-13	1.588209e-8	4.812755e-10
34	8009844	8052024	NM_025133	FBXO11	-0.624794	1.055649e-12	1.829124e-8	5.379776e-10
35	8009844	8128620	NM_001080450	BEND3	0.624709	1.065205e-12	1.845681e-8	5.273374e-10
36	8009844	8000948	NM_004765	BCL7C	0.624708	1.065313e-12	1.845867e-8	5.127409e-10
37	8009844	7989323	NM_004330	BNIP2	-0.623602	1.199032e-12	2.077564e-8	5.615037e-10
38	8009844	8024356	NM_138422	ADAT3	0.622420	1.359647e-12	2.355860e-8	6.199631e-10
39	8009844	8158094	NM_144965	TTC16	0.621539	1.492754e-12	2.586494e-8	6.632037e-10
40	8009844	7997633	NM_005153	USP10	-0.621309	1.529608e-12	2.650351e-8	6.625878e-10
41	8009844	8118028	NM_020442	VARS2	0.620551	1.657098e-12	2.871253e-8	7.003057e-10
42	8009844	8067820	BC024764	IQSEC3	0.620312	1.699348e-12	2.944460e-8	7.010618e-10
43	8009844	7917697	NM_005263	GFI1	0.620131	1.732020e-12	3.001071e-8	6.979234e-10
44	8009844	8016947	NM_004758	BZRAP1	0.619901	1.774508e-12	3.074690e-8	6.987932e-10
45	8009844	7949754	NM_013246	CLCF1	0.619824	1.789059e-12	3.099903e-8	6.888673e-10
46	8009844	8031815	NM_173632	ZNF776	-0.619722	1.808263e-12	3.133178e-8	6.811257e-10
47	8009844	8042119	NM_022894	PAPOLG	-0.619223	1.905539e-12	3.301727e-8	7.024951e-10
48	8009844	8062971	NM_001048223	DBNDD2	0.618527	2.049962e-12	3.551969e-8	7.399935e-10
49	8009844	7995308	hsa-mir-1826		0.618379	2.081998e-12	3.607478e-8	7.362200e-10
50	8009844	8039269	NM_198988	LENG9	0.617615	2.254918e-12	3.907096e-8	7.814192e-10

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation