[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1693	7908816	NM_001017403	LGR6		leucine-rich repeat-containing G protein-coupled receptor 6

Fetching correlation data, please wait...
Getting list of correlations for id 1693.
Getting list of p-values for id 1693.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.107 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7908816	8099200	NM_144720	JAKMIP1	0.650647	5.794074e-14	1.003939e-9	1.003939e-9
2	7908816	8009844	NM_001031803	LLGL2	0.631478	5.115337e-13	8.863344e-9	4.431672e-9
3	7908816	7917697	NM_005263	GFI1	0.615339	2.856862e-12	4.950085e-8	1.650028e-8
4	7908816	8073842	NM_017931	TTC38	0.614600	3.083988e-12	5.343626e-8	1.335906e-8
5	7908816	8073096	NM_181773	APOBEC3H	0.603101	9.877164e-12	1.711416e-7	3.422832e-8
6	7908816	8038804	NM_152353	CLDND2	0.594122	2.374285e-11	4.113924e-7	6.856541e-8
7	7908816	7996064	NM_153837	GPR114	0.572324	1.790799e-10	3.102918e-6	4.432740e-7
8	7908816	7907430	NM_000639	FASLG	0.566642	2.960601e-10	5.129833e-6	6.412291e-7
9	7908816	8008372	NM_017957	EPN3	0.556896	6.860060e-10	1.188643e-5	1.320714e-6
10	7908816	8032682	NM_139355	MATK	0.552210	1.017823e-9	1.763582e-5	1.763582e-6
11	7908816	8034043	NM_030760	S1PR5	0.547921	1.452769e-9	2.517213e-5	2.288376e-6
12	7908816	8158094	NM_144965	TTC16	0.543868	2.024062e-9	3.507092e-5	2.922576e-6
13	7908816	8049448	NM_001037131	AGAP1	0.540525	2.651895e-9	4.594938e-5	3.534568e-6
14	7908816	8151334	NM_005098	MSC	0.539583	2.860352e-9	4.956132e-5	3.540094e-6
15	7908816	8054297	NM_004854	CHST10	0.535646	3.913467e-9	6.780863e-5	4.520576e-6
16	7908816	8097867	NM_015196	KIAA0922	-0.535523	3.951716e-9	6.847138e-5	4.279462e-6
17	7908816	8094086	ENST00000382488		0.526163	8.193398e-9	1.419670e-4	8.351000e-6
18	7908816	7911383	NM_017891	C1orf159	0.525948	8.329660e-9	1.443280e-4	8.018223e-6
19	7908816	8087691	NM_001005505	CACNA2D2	0.525367	8.709194e-9	1.509042e-4	7.942326e-6
20	7908816	7906475	NM_001004310	FCRL6	0.525039	8.929833e-9	1.547272e-4	7.736361e-6
21	7908816	8177901	NM_020442	VARS2	0.524767	9.117844e-9	1.579849e-4	7.523090e-6
22	7908816	8023220	NM_005904	SMAD7	0.523933	9.716441e-9	1.683568e-4	7.652580e-6
23	7908816	8046408	NM_002610	PDK1	-0.523006	1.042657e-8	1.806612e-4	7.854836e-6
24	7908816	7998921	NM_032805	ZSCAN10	0.521450	1.173116e-8	2.032659e-4	8.469412e-6
25	7908816	7934615	NM_004747	DLG5	0.521283	1.187975e-8	2.058403e-4	8.233614e-6
26	7908816	7979963	NM_012074	DPF3	0.519848	1.323606e-8	2.293413e-4	8.820818e-6
27	7908816	8031815	NM_173632	ZNF776	-0.518683	1.444576e-8	2.503016e-4	9.270431e-6
28	7908816	8078567	ENST00000458918		0.517868	1.535360e-8	2.660319e-4	9.501138e-6
29	7908816	7952004	NM_174934	SCN4B	0.516585	1.689440e-8	2.927293e-4	1.009412e-5
30	7908816	7913965	NM_001114759	ZNF683	0.515662	1.809346e-8	3.135053e-4	1.045018e-5
31	7908816	8090577	NM_003925	MBD4	-0.515259	1.864124e-8	3.229968e-4	1.041925e-5
32	7908816	8118028	NM_020442	VARS2	0.513735	2.086412e-8	3.615127e-4	1.129727e-5
33	7908816	7996081	NM_201524	GPR56	0.513255	2.161356e-8	3.744982e-4	1.134843e-5
34	7908816	7910134	NM_031944	MIXL1	0.513091	2.187675e-8	3.790584e-4	1.114878e-5
35	7908816	8158009	NM_014580	SLC2A8	0.512114	2.350396e-8	4.072531e-4	1.163580e-5
36	7908816	8113469	NM_014819	PJA2	-0.511799	2.405368e-8	4.167782e-4	1.157717e-5
37	7908816	8008029	NM_013351	TBX21	0.510186	2.706117e-8	4.688889e-4	1.267267e-5
38	7908816	8067011	NM_015339	ADNP	-0.510016	2.739956e-8	4.747521e-4	1.249348e-5
39	7908816	8174794	NM_001079872	CUL4B	-0.509676	2.808491e-8	4.866273e-4	1.247762e-5
40	7908816	7952884	NM_054025	B3GAT1	0.509320	2.882084e-8	4.993786e-4	1.248447e-5
41	7908816	8084219	NM_017644	KLHL24	-0.508786	2.996210e-8	5.191533e-4	1.266228e-5
42	7908816	8073007	NM_012323	MAFF	0.508322	3.098697e-8	5.369112e-4	1.278360e-5
43	7908816	8164235	NM_001002913	PTRH1	0.507875	3.200416e-8	5.545360e-4	1.289619e-5
44	7908816	8071981	NM_001145206	KIAA1671	0.507640	3.255446e-8	5.640711e-4	1.281980e-5
45	7908816	7983663	NM_005154	USP8	-0.506230	3.603848e-8	6.244387e-4	1.387641e-5
46	7908816	8061324	NM_012255	XRN2	-0.506181	3.616627e-8	6.266529e-4	1.362289e-5
47	7908816	8016382	NM_199262	SP6	0.505867	3.699205e-8	6.409612e-4	1.363747e-5
48	7908816	8052024	NM_025133	FBXO11	-0.504199	4.168951e-8	7.223541e-4	1.504904e-5
49	7908816	7948973	NM_054108	HRASLS5	0.503624	4.343812e-8	7.526523e-4	1.536025e-5
50	7908816	7951133	NM_032427	MAML2	-0.503468	4.392275e-8	7.610494e-4	1.522099e-5

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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