[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3012	8125798	NM_002418	MLN		motilin

Fetching correlation data, please wait...
Getting list of correlations for id 3012.
Getting list of p-values for id 3012.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.142 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8125798	7994675	NM_181718	ASPHD1	0.683745	9.123575e-16	1.580842e-11	1.580842e-11
2	8125798	7913226	NM_012400	PLA2G2D	0.666380	8.600710e-15	1.490245e-10	7.451225e-11
3	8125798	7970727	NM_001265	CDX2	0.640130	1.950613e-13	3.379828e-9	1.126609e-9
4	8125798	8056825	NM_001145250	SP9	0.638347	2.385193e-13	4.132823e-9	1.033206e-9
5	8125798	8116195	NM_173465	COL23A1	0.635931	3.126172e-13	5.416719e-9	1.083344e-9
6	8125798	8048205	NM_000597	IGFBP2	0.634439	3.690153e-13	6.393929e-9	1.065655e-9
7	8125798	8036479	NM_033557	YIF1B	0.629063	6.659005e-13	1.153806e-8	1.648294e-9
8	8125798	8011975	NM_177550	SLC13A5	0.623784	1.175977e-12	2.037616e-8	2.547020e-9
9	8125798	7945536	NM_016564	CEND1	0.621845	1.445258e-12	2.504199e-8	2.782444e-9
10	8125798	8086985	NM_000094	COL7A1	0.621766	1.457325e-12	2.525106e-8	2.525106e-9
11	8125798	8094476	NM_018317	TBC1D19	-0.620838	1.607669e-12	2.785608e-8	2.532371e-9
12	8125798	7992197	ENST00000429194		0.619668	1.818669e-12	3.151208e-8	2.626006e-9
13	8125798	8110708	NM_007030	TPPP	0.619400	1.870457e-12	3.240940e-8	2.493031e-9
14	8125798	7899643	NM_001525	HCRTR1	0.619334	1.883609e-12	3.263729e-8	2.331235e-9
15	8125798	8116724	NM_006567	FARS2	-0.617852	2.199957e-12	3.811866e-8	2.541244e-9
16	8125798	8114193	NM_001033503	SAR1B	-0.617851	2.200055e-12	3.812035e-8	2.382522e-9
17	8125798	8068510	ENST00000362936		0.615298	2.869059e-12	4.971219e-8	2.924247e-9
18	8125798	7981447	NM_001100119	XRCC3	0.613063	3.612981e-12	6.260212e-8	3.477895e-9
19	8125798	7931571	NM_145202	PRAP1	0.612884	3.680025e-12	6.376380e-8	3.355989e-9
20	8125798	7914361	NM_001856	COL16A1	0.612821	3.703730e-12	6.417453e-8	3.208726e-9
21	8125798	8069037	NM_000383	AIRE	0.612313	3.901927e-12	6.760869e-8	3.219461e-9
22	8125798	8153322	NM_015193	ARC	0.611873	4.081460e-12	7.071946e-8	3.214521e-9
23	8125798	7900352	NM_022120	OXCT2	0.610994	4.464978e-12	7.736467e-8	3.363681e-9
24	8125798	7915257	NM_022120	OXCT2	0.610994	4.464978e-12	7.736467e-8	3.223528e-9
25	8125798	8159670	NM_006647	NOXA1	0.610800	4.554024e-12	7.890758e-8	3.156303e-9
26	8125798	7902441	NM_030965	ST6GALNAC5	0.610273	4.805358e-12	8.326243e-8	3.202401e-9
27	8125798	8076747	AK123383	LOC642648	0.610242	4.820334e-12	8.352192e-8	3.093405e-9
28	8125798	7919251	NM_016334	GPR89B	-0.609441	5.228829e-12	9.059991e-8	3.235711e-9
29	8125798	8153838	NM_004260	RECQL4	0.608857	5.547802e-12	9.612677e-8	3.314716e-9
30	8125798	7904853	NM_001097612	GPR89A	-0.608767	5.598808e-12	9.701055e-8	3.233685e-9
31	8125798	7989365	NM_134260	RORA	-0.607714	6.227046e-12	1.078960e-7	3.480517e-9
32	8125798	8165453	NM_001013653	LRRC26	0.606864	6.783195e-12	1.175324e-7	3.672888e-9
33	8125798	8079896	NM_004186	SEMA3F	0.606109	7.317435e-12	1.267892e-7	3.842097e-9
34	8125798	7988987	NM_004498	ONECUT1	0.605708	7.617066e-12	1.319809e-7	3.881791e-9
35	8125798	8024429	NM_000479	AMH	0.604984	8.188768e-12	1.418868e-7	4.053908e-9
36	8125798	8146462	NM_022454	SOX17	0.604674	8.446177e-12	1.463469e-7	4.065192e-9
37	8125798	8175732	NM_175742	MAGEA2	0.604293	8.772781e-12	1.520060e-7	4.108270e-9
38	8125798	8092888	NM_138399	TMEM44	0.603589	9.409927e-12	1.630458e-7	4.290679e-9
39	8125798	7992302	NM_020825	CRAMP1L	0.601834	1.119682e-11	1.940072e-7	4.974544e-9
40	8125798	8046555	NM_014621	HOXD4	0.600873	1.230951e-11	2.132868e-7	5.332170e-9
41	8125798	7904930	NM_016334	GPR89B	-0.600559	1.269647e-11	2.199918e-7	5.365654e-9
42	8125798	8139907	ENST00000410496		0.599895	1.355171e-11	2.348105e-7	5.590726e-9
43	8125798	8000616	NM_024816	RABEP2	0.599188	1.452396e-11	2.516567e-7	5.852481e-9
44	8125798	8170562	NM_175742	MAGEA2	0.597693	1.680526e-11	2.911847e-7	6.617833e-9
45	8125798	8050255	NM_024894	NOL10	-0.597639	1.689504e-11	2.927404e-7	6.505343e-9
46	8125798	7998265	AK097604	LOC100130285	0.597616	1.693245e-11	2.933885e-7	6.378011e-9
47	8125798	8031511	NM_153219	ZNF524	0.597577	1.699686e-11	2.945046e-7	6.266055e-9
48	8125798	7977216	NM_015656	KIF26A	0.597545	1.704997e-11	2.954248e-7	6.154683e-9
49	8125798	8033433	NM_198492	CLEC4G	0.597363	1.735491e-11	3.007086e-7	6.136910e-9
50	8125798	7971150	NM_005780	LHFP	0.597070	1.785631e-11	3.093963e-7	6.187925e-9

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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