Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7463	7919251	NM_016334	GPR89B		G protein-coupled receptor 89B

Column legend:

• Rank: Row number sorted by strongest correlation
• Label1: Affymetrix probe set identifier(s) of the gene used in the search
• Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
• AccNum: The unique identifier for a sequence record [accessible at NCBI]
• GeneSym: Official gene symbol
• Info: Link to more information about the variable in the given row
• Pearson r: Pearson correlation coefficient
• Raw p: Unadjusted p-value
• Bonferroni: Bonferroni corrected p-value
• FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Info	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7919251	7904930	NM_016334	GPR89B		0.997803	2.998722e-123	5.195886e-119	5.195886e-119
2	7919251	7904853	NM_001097612	GPR89A		0.965239	7.706764e-62	1.335351e-57	6.676755e-58
3	7919251	7925364	NM_018072	HEATR1		0.884411	7.218802e-36	1.250802e-31	4.169340e-32
4	7919251	8019807	NM_005151	USP14		0.879299	5.861290e-35	1.015586e-30	2.538964e-31
5	7919251	7916443	NM_015306	USP24		0.866338	7.958799e-33	1.379021e-28	2.758042e-29
6	7919251	7953878	NM_001004419	CLEC2D		0.864259	1.667601e-32	2.889452e-28	4.815753e-29
7	7919251	7931187	NM_004725	BUB3		0.864007	1.822724e-32	3.158233e-28	4.511762e-29
8	7919251	8103106	NM_006726	LRBA		0.863638	2.074884e-32	3.595152e-28	4.493940e-29
9	7919251	7969935	NM_000123	ERCC5		0.863606	2.098520e-32	3.636105e-28	4.040117e-29
10	7919251	7917156	NM_003902	FUBP1		0.862377	3.223749e-32	5.585790e-28	5.585790e-29
11	7919251	7969881	NM_003291	TPP2		0.861058	5.088237e-32	8.816388e-28	8.014899e-29
12	7919251	8145136	NM_005605	PPP3CC		0.860906	5.360928e-32	9.288881e-28	7.740734e-29
13	7919251	7972190	NM_022118	RBM26		0.860026	7.247377e-32	1.255753e-27	9.659638e-29
14	7919251	8051622	NM_001031684	SRSF7		0.859597	8.388561e-32	1.453486e-27	1.038204e-28
15	7919251	8054614	NM_022662	ANAPC1		0.858479	1.225224e-31	2.122945e-27	1.415297e-28
16	7919251	8043251	NM_017952	PTCD3		0.858437	1.242494e-31	2.152870e-27	1.345544e-28
17	7919251	8027416	NM_003796	C19orf2		0.856876	2.096997e-31	3.633466e-27	2.137333e-28
18	7919251	8107282	NM_139281	WDR36		0.856258	2.575043e-31	4.461777e-27	2.478765e-28
19	7919251	8051928	NM_006036	PREPL		0.853955	5.491310e-31	9.514794e-27	5.007786e-28
20	7919251	8162313	NM_013417	IARS		0.850248	1.809017e-30	3.134485e-26	1.567242e-27
21	7919251	7938313	NM_006391	IPO7		0.849379	2.381048e-30	4.125642e-26	1.964592e-27
22	7919251	7903239	NM_000028	AGL		0.848240	3.404182e-30	5.898427e-26	2.681103e-27
23	7919251	8114861	NM_020117	LARS		0.846297	6.223336e-30	1.078317e-25	4.688337e-27
24	7919251	8162850	NM_017746	TEX10		0.845619	7.666842e-30	1.328434e-25	5.535140e-27
25	7919251	7968931	NM_031431	COG3		0.845567	7.789343e-30	1.349659e-25	5.398638e-27
26	7919251	8136401	NM_015135	NUP205		0.845556	7.816426e-30	1.354352e-25	5.209046e-27
27	7919251	8092095	NM_015028	TNIK		0.845234	8.625008e-30	1.494455e-25	5.535019e-27
28	7919251	7982957	NM_001080541	MGA		0.845101	8.984362e-30	1.556720e-25	5.559715e-27
29	7919251	8047097	NM_014905	GLS		0.845027	9.190125e-30	1.592373e-25	5.490941e-27
30	7919251	8117140	NM_017774	CDKAL1		0.844887	9.589968e-30	1.661654e-25	5.538846e-27
31	7919251	7924351	NM_004446	EPRS		0.844705	1.013977e-29	1.756917e-25	5.667475e-27
32	7919251	7967386	NM_022782	MPHOSPH9		0.843501	1.461264e-29	2.531932e-25	7.912288e-27
33	7919251	8128472	NM_006828	ASCC3		0.843070	1.664332e-29	2.883788e-25	8.738753e-27
34	7919251	8130129	NM_198887	NUP43		0.842326	2.081121e-29	3.605958e-25	1.060576e-26
35	7919251	8050367	NM_015909	NBAS		0.841881	2.378110e-29	4.120550e-25	1.177300e-26
36	7919251	8101340	NR_003249	HNRPDL		0.841109	2.993499e-29	5.186837e-25	1.440788e-26
37	7919251	8155946	NM_033305	VPS13A		0.840123	4.009302e-29	6.946918e-25	1.877545e-26
38	7919251	8107458	NM_016144	COMMD10		0.839978	4.184589e-29	7.250638e-25	1.908063e-26
39	7919251	8113157	NM_014639	TTC37		0.839906	4.273468e-29	7.404638e-25	1.898625e-26
40	7919251	7988713	NM_017672	TRPM7		0.839883	4.302485e-29	7.454916e-25	1.863729e-26
41	7919251	8020630	NM_153211	TTC39C		0.839588	4.693285e-29	8.132054e-25	1.983428e-26
42	7919251	7987981	NM_174916	UBR1		0.839085	5.441082e-29	9.427762e-25	2.244705e-26
43	7919251	8006377	NM_001098507	ZNF207		0.839007	5.565956e-29	9.644132e-25	2.242821e-26
44	7919251	8000200	NM_018427	RRN3		0.838673	6.139073e-29	1.063717e-24	2.417539e-26
45	7919251	8116664	NM_003913	PRPF4B		0.838610	6.252027e-29	1.083289e-24	2.407308e-26
46	7919251	8039947	NM_006625	SRSF10		0.838570	6.325264e-29	1.095978e-24	2.382562e-26
47	7919251	8052845	NM_022173	TIA1		0.838500	6.456448e-29	1.118709e-24	2.380231e-26
48	7919251	8129193	NM_001042475	C6orf204		0.837900	7.689135e-29	1.332296e-24	2.775617e-26
49	7919251	8101376	NM_014933	SEC31A		0.837873	7.749817e-29	1.342811e-24	2.740430e-26
50	7919251	8051670	NM_005633	SOS1		0.837724	8.094710e-29	1.402570e-24	2.805141e-26

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.