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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id Label1 AccNum GeneSym Info Gene Name
10173 7999608 NM_018427 RRN3 link to infopage RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)
15020 8000200 NM_018427 RRN3 link to infopage RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)
15253 7994565 NM_018427 RRN3 link to infopage RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)

Fetching correlation data, please wait...
Getting list of correlations for id 10173.
Getting list of p-values for id 10173.
1 of 3 done.
Getting list of correlations for id 15020.
Getting list of p-values for id 15020.
2 of 3 done.
Getting list of correlations for id 15253.
Getting list of p-values for id 15253.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.338 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 7994565 8000200 NM_018427 RRN3 link to infopage 0.995391 1.060816e-106 5.514229e-102 5.514229e-102
2 8000200 7994565 NM_018427 RRN3 link to infopage 0.995391 1.060816e-106 5.514229e-102 2.757115e-102
3 8000200 8099649 NM_001358 DHX15 link to infopage 0.885935 3.792165e-36 1.971205e-31 6.570684e-32
4 8000200 8016898 NM_001078166 SRSF1 link to infopage 0.882431 1.643492e-35 8.543035e-31 2.135759e-31
5 8000200 8133914 NR_024549 DMTF1 link to infopage 0.881409 2.498468e-35 1.298728e-30 2.597457e-31
6 8000200 7931187 NM_004725 BUB3 link to infopage 0.880763 3.248989e-35 1.688857e-30 2.814761e-31
7 7994565 8099649 NM_001358 DHX15 link to infopage 0.878201 9.078961e-35 4.719335e-30 6.741907e-31
8 8000200 8139896 NR_022007 PMS2L4 link to infopage 0.873890 4.860730e-34 2.526656e-29 3.158320e-30
9 7994565 7931187 NM_004725 BUB3 link to infopage 0.873319 6.041758e-34 3.140566e-29 3.489518e-30
10 7994565 8133914 NR_024549 DMTF1 link to infopage 0.872339 8.755546e-34 4.551221e-29 4.551221e-30
11 8000200 7925364 NM_018072 HEATR1 link to infopage 0.871170 1.357536e-33 7.056608e-29 6.415098e-30
12 8000200 7903369 NM_133496 SLC30A7 link to infopage 0.870951 1.473378e-33 7.658765e-29 6.382304e-30
13 7994565 8016898 NM_001078166 SRSF1 link to infopage 0.869950 2.135664e-33 1.110140e-28 8.539536e-30
14 7994565 7903369 NM_133496 SLC30A7 link to infopage 0.867544 5.151201e-33 2.677646e-28 1.912604e-29
15 8000200 7969881 NM_003291 TPP2 link to infopage 0.865001 1.282460e-32 6.666356e-28 4.444238e-29
16 8000200 8116664 NM_003913 PRPF4B link to infopage 0.864146 1.735787e-32 9.022794e-28 5.639246e-29
17 8000200 7987325 NM_014691 AQR link to infopage 0.864095 1.766891e-32 9.184475e-28 5.402633e-29
18 8000200 8054614 NM_022662 ANAPC1 link to infopage 0.863553 2.137864e-32 1.111283e-27 6.173795e-29
19 8000200 8046590 NM_194247 HNRNPA3 link to infopage 0.860593 5.968717e-32 3.102599e-27 1.632947e-28
20 8000200 8053046 NM_003584 DUSP11 link to infopage 0.860355 6.476558e-32 3.366579e-27 1.683290e-28
21 8000200 8105104 NM_175921 C5orf51 link to infopage 0.860274 6.659133e-32 3.461484e-27 1.648326e-28
22 8000200 7956697 NM_015026 MON2 link to infopage 0.859953 7.429601e-32 3.861981e-27 1.755446e-28
23 8000200 7953878 NM_001004419 CLEC2D link to infopage 0.859878 7.622962e-32 3.962492e-27 1.722822e-28
24 7994565 8139896 NR_022007 PMS2L4 link to infopage 0.857901 1.487954e-31 7.734531e-27 3.222721e-28
25 8000200 7916185 NM_001009881 ZCCHC11 link to infopage 0.855715 3.082467e-31 1.602297e-26 6.409189e-28
26 7994565 7925364 NM_018072 HEATR1 link to infopage 0.855655 3.143423e-31 1.633983e-26 6.284549e-28
27 7994565 8054614 NM_022662 ANAPC1 link to infopage 0.854781 4.191525e-31 2.178796e-26 8.069616e-28
28 8000200 7917156 NM_003902 FUBP1 link to infopage 0.854750 4.234474e-31 2.201122e-26 7.861150e-28
29 7994565 8105104 NM_175921 C5orf51 link to infopage 0.854648 4.377701e-31 2.275573e-26 7.846803e-28
30 8000200 8107066 NM_005575 LNPEP link to infopage 0.853749 5.871709e-31 3.052173e-26 1.017391e-27
31 8000200 8044417 NM_032824 TMEM87B link to infopage 0.853423 6.529664e-31 3.394185e-26 1.094898e-27
32 8000200 8043251 NM_017952 PTCD3 link to infopage 0.852797 7.997771e-31 4.157321e-26 1.299163e-27
33 7994565 8116664 NM_003913 PRPF4B link to infopage 0.852789 8.018370e-31 4.168029e-26 1.263039e-27
34 7994565 7916185 NM_001009881 ZCCHC11 link to infopage 0.852335 9.281140e-31 4.824430e-26 1.418950e-27
35 8000200 8154394 NM_001039697 SNAPC3 link to infopage 0.851851 1.084703e-30 5.638395e-26 1.610970e-27
36 7994565 7987325 NM_014691 AQR link to infopage 0.851482 1.220716e-30 6.345405e-26 1.762613e-27
37 7994565 8053046 NM_003584 DUSP11 link to infopage 0.850740 1.546776e-30 8.040294e-26 2.173053e-27
38 8000200 7943620 NM_000051 ATM link to infopage 0.850682 1.575916e-30 8.191767e-26 2.155728e-27
39 7994565 7969881 NM_003291 TPP2 link to infopage 0.850496 1.671926e-30 8.690840e-26 2.228420e-27
40 8000200 7916443 NM_015306 USP24 link to infopage 0.850419 1.713432e-30 8.906589e-26 2.226647e-27
41 8000200 8101340 NR_003249 HNRPDL link to infopage 0.850079 1.908090e-30 9.918444e-26 2.419133e-27
42 8000200 7968333 NM_005800 USPL1 link to infopage 0.849742 2.122959e-30 1.103536e-25 2.627466e-27
43 8000200 8130567 NM_030752 TCP1 link to infopage 0.849164 2.547915e-30 1.324432e-25 3.080073e-27
44 7994565 8046590 NM_194247 HNRNPA3 link to infopage 0.849046 2.644259e-30 1.374512e-25 3.123891e-27
45 8000200 8052845 NM_022173 TIA1 link to infopage 0.848977 2.702254e-30 1.404659e-25 3.121464e-27
46 8000200 7999562 NM_002582 PARN link to infopage 0.848918 2.752394e-30 1.430722e-25 3.110265e-27
47 8000200 8145136 NM_005605 PPP3CC link to infopage 0.848745 2.906411e-30 1.510781e-25 3.214428e-27
48 8000200 8107375 NM_022828 YTHDC2 link to infopage 0.848310 3.330132e-30 1.731036e-25 3.606325e-27
49 7994565 7917156 NM_003902 FUBP1 link to infopage 0.847952 3.724761e-30 1.936168e-25 3.951364e-27
50 8000200 8041283 NM_016252 BIRC6 link to infopage 0.847511 4.273561e-30 2.221440e-25 4.442879e-27

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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