[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6336	8162850	NM_017746	TEX10		testis expressed 10

Fetching correlation data, please wait...
Getting list of correlations for id 6336.
Getting list of p-values for id 6336.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.170 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8162850	8041149	NM_015131	WDR43	0.875749	2.376057e-34	4.116994e-30	4.116994e-30
2	8162850	7925364	NM_018072	HEATR1	0.871705	1.111447e-33	1.925804e-29	9.629021e-30
3	8162850	8114861	NM_020117	LARS	0.864311	1.637649e-32	2.837555e-28	9.458517e-29
4	8162850	8043251	NM_017952	PTCD3	0.862858	2.726620e-32	4.724414e-28	1.181103e-28
5	8162850	8050367	NM_015909	NBAS	0.859853	7.687843e-32	1.332073e-27	2.664145e-28
6	8162850	8055060	NM_018383	WDR33	0.859674	8.171863e-32	1.415939e-27	2.359898e-28
7	8162850	8107282	NM_139281	WDR36	0.859170	9.699065e-32	1.680557e-27	2.400796e-28
8	8162850	8107474	NM_005509	DMXL1	0.857481	1.713145e-31	2.968367e-27	3.710459e-28
9	8162850	8111629	NM_153485	NUP155	0.857153	1.911872e-31	3.312701e-27	3.680779e-28
10	8162850	8136401	NM_015135	NUP205	0.855047	3.841410e-31	6.656012e-27	6.656012e-28
11	8162850	7972190	NM_022118	RBM26	0.854750	4.233980e-31	7.336216e-27	6.669288e-28
12	8162850	8047641	NM_177538	CYP20A1	0.852568	8.610272e-31	1.491902e-26	1.243251e-27
13	8162850	7953878	NM_001004419	CLEC2D	0.852399	9.092770e-31	1.575504e-26	1.211926e-27
14	8162850	7916443	NM_015306	USP24	0.850194	1.840128e-30	3.188390e-26	2.277421e-27
15	8162850	7985044	NM_173469	UBE2Q2	0.849455	2.324288e-30	4.027293e-26	2.684862e-27
16	8162850	7969935	NM_000123	ERCC5	0.849448	2.329259e-30	4.035906e-26	2.522441e-27
17	8162850	8175420	NM_002139	RBMX	0.848483	3.154521e-30	5.465839e-26	3.215199e-27
18	8162850	7969881	NM_003291	TPP2	0.848314	3.326038e-30	5.763026e-26	3.201681e-27
19	8162850	7919251	NM_016334	GPR89B	0.845619	7.666842e-30	1.328434e-25	6.991756e-27
20	8162850	8080645	NM_012096	APPL1	0.844580	1.053143e-29	1.824781e-25	9.123905e-27
21	8162850	7904930	NM_016334	GPR89B	0.844093	1.221465e-29	2.116432e-25	1.007825e-26
22	8162850	8105104	NM_175921	C5orf51	0.843510	1.457116e-29	2.524746e-25	1.147612e-26
23	8162850	8020930	NM_018255	ELP2	0.841234	2.883833e-29	4.996817e-25	2.172529e-26
24	8162850	8156718	NM_002486	NCBP1	0.839059	5.481936e-29	9.498551e-25	3.957730e-26
25	8162850	8039947	NM_006625	SRSF10	0.838767	5.972152e-29	1.034795e-24	4.139179e-26
26	8162850	8162313	NM_013417	IARS	0.837560	8.488907e-29	1.470873e-24	5.657203e-26
27	8162850	7917103	NM_015534	ZZZ3	0.836257	1.236810e-28	2.143020e-24	7.937111e-26
28	8162850	7957106	NM_014515	CNOT2	0.835882	1.377356e-28	2.386544e-24	8.523371e-26
29	8162850	7939242	NM_005898	CAPRIN1	0.834586	1.994856e-28	3.456488e-24	1.191892e-25
30	8162850	7915995	NM_007051	FAF1	0.834462	2.066263e-28	3.580214e-24	1.193405e-25
31	8162850	7931187	NM_004725	BUB3	0.833592	2.644318e-28	4.581809e-24	1.478003e-25
32	8162850	8040985	NM_032434	ZNF512	0.833178	2.971443e-28	5.148620e-24	1.608944e-25
33	8162850	7987981	NM_174916	UBR1	0.832850	3.259197e-28	5.647210e-24	1.711276e-25
34	8162850	7924351	NM_004446	EPRS	0.832332	3.769647e-28	6.531668e-24	1.921079e-25
35	8162850	8101340	NR_003249	HNRPDL	0.832240	3.867785e-28	6.701712e-24	1.914775e-25
36	8162850	7999520	NM_015659	RSL1D1	0.832154	3.962103e-28	6.865136e-24	1.906982e-25
37	8162850	8122409	NM_003630	PEX3	0.832116	4.003730e-28	6.937264e-24	1.874936e-25
38	8162850	8027416	NM_003796	C19orf2	0.832092	4.031247e-28	6.984941e-24	1.838142e-25
39	8162850	8086077	NM_015097	CLASP2	0.831019	5.437259e-28	9.421139e-24	2.415677e-25
40	8162850	7930614	NM_198514	NHLRC2	0.830866	5.673206e-28	9.829963e-24	2.457491e-25
41	8162850	7967386	NM_022782	MPHOSPH9	0.830419	6.420821e-28	1.112536e-23	2.713502e-25
42	8162850	8057034	NM_003690	PRKRA	0.830313	6.611567e-28	1.145586e-23	2.727586e-25
43	8162850	7943176	NM_004268	MED17	0.830213	6.797540e-28	1.177810e-23	2.739092e-25
44	8162850	7912852	NM_001412	EIF1AX	0.830180	6.859284e-28	1.188508e-23	2.701155e-25
45	8162850	8099649	NM_001358	DHX15	0.829521	8.225465e-28	1.425226e-23	3.167170e-25
46	8162850	8043861	NM_015904	EIF5B	0.829487	8.302821e-28	1.438630e-23	3.127456e-25
47	8162850	8111892	NM_000436	OXCT1	0.829350	8.622535e-28	1.494027e-23	3.178780e-25
48	8162850	8053046	NM_003584	DUSP11	0.828309	1.146673e-27	1.986841e-23	4.139252e-25
49	8162850	7939137	NM_006360	EIF3M	0.827858	1.296674e-27	2.246747e-23	4.585198e-25
50	8162850	8109368	NM_005754	G3BP1	0.827488	1.433812e-27	2.484365e-23	4.968731e-25

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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