[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4124	7990092	NM_006901	MYO9A		myosin IXA

Fetching correlation data, please wait...
Getting list of correlations for id 4124.
Getting list of p-values for id 4124.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.133 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7990092	8091190	NM_001184	ATR	0.889060	9.842488e-37	1.705408e-32	1.705408e-32
2	7990092	8155946	NM_033305	VPS13A	0.870681	1.628963e-33	2.822503e-29	1.411252e-29
3	7990092	8047097	NM_014905	GLS	0.865994	9.003385e-33	1.560017e-28	5.200055e-29
4	7990092	8174893	NM_001081550	THOC2	0.865124	1.227802e-32	2.127412e-28	5.318529e-29
5	7990092	7967386	NM_022782	MPHOSPH9	0.864246	1.675186e-32	2.902595e-28	5.805189e-29
6	7990092	8099860	NM_002913	RFC1	0.863774	1.978317e-32	3.427830e-28	5.713050e-29
7	7990092	7953878	NM_001004419	CLEC2D	0.863649	2.067093e-32	3.581651e-28	5.116645e-29
8	7990092	7924351	NM_004446	EPRS	0.863088	2.516338e-32	4.360058e-28	5.450073e-29
9	7990092	8051928	NM_006036	PREPL	0.860809	5.543551e-32	9.605311e-28	1.067257e-28
10	7990092	8043251	NM_017952	PTCD3	0.860519	6.122047e-32	1.060767e-27	1.060767e-28
11	7990092	8154531	NM_017925	DENND4C	0.860212	6.801856e-32	1.178558e-27	1.071416e-28
12	7990092	8177560	NM_018429	BDP1	0.859541	8.550218e-32	1.481496e-27	1.234580e-28
13	7990092	8021924	NM_005131	THOC1	0.859304	9.265460e-32	1.605426e-27	1.234943e-28
14	7990092	8144812	NM_006197	PCM1	0.858016	1.432024e-31	2.481268e-27	1.772334e-28
15	7990092	7969881	NM_003291	TPP2	0.857823	1.527885e-31	2.647365e-27	1.764910e-28
16	7990092	8106025	NM_018429	BDP1	0.857713	1.585245e-31	2.746754e-27	1.716721e-28
17	7990092	7903239	NM_000028	AGL	0.855195	3.658509e-31	6.339099e-27	3.728882e-28
18	7990092	8113157	NM_014639	TTC37	0.854616	4.423974e-31	7.665420e-27	4.258567e-28
19	7990092	8051882	NM_133259	LRPPRC	0.854392	4.760808e-31	8.249052e-27	4.341606e-28
20	7990092	8114861	NM_020117	LARS	0.850601	1.617100e-30	2.801948e-26	1.400974e-27
21	7990092	8023561	NM_005570	LMAN1	0.849231	2.494736e-30	4.322629e-26	2.058395e-27
22	7990092	7925364	NM_018072	HEATR1	0.848791	2.864083e-30	4.962596e-26	2.255725e-27
23	7990092	7989128	NM_144571	CNOT6L	0.848487	3.150765e-30	5.459331e-26	2.373622e-27
24	7990092	8027416	NM_003796	C19orf2	0.848468	3.170106e-30	5.492843e-26	2.288685e-27
25	7990092	7974146	NM_017922	PRPF39	0.848262	3.380363e-30	5.857155e-26	2.342862e-27
26	7990092	7916562	NM_002136	HNRNPA1	0.848153	3.497912e-30	6.060833e-26	2.331090e-27
27	7990092	8111892	NM_000436	OXCT1	0.848052	3.609548e-30	6.254264e-26	2.316394e-27
28	7990092	7982957	NM_001080541	MGA	0.846934	5.110744e-30	8.855387e-26	3.162638e-27
29	7990092	7970473	NM_022459	XPO4	0.846848	5.249232e-30	9.095344e-26	3.136325e-27
30	7990092	7902594	NM_182948	PRKACB	0.846447	5.941934e-30	1.029559e-25	3.431863e-27
31	7990092	8128472	NM_006828	ASCC3	0.846243	6.327191e-30	1.096312e-25	3.536492e-27
32	7990092	7956910	NM_018448	CAND1	0.846222	6.368268e-30	1.103430e-25	3.448218e-27
33	7990092	7926609	NM_005180	BMI1	0.845532	7.873350e-30	1.364215e-25	4.133986e-27
34	7990092	8022814	NM_002136	HNRNPA1	0.844981	9.320454e-30	1.614955e-25	4.749868e-27
35	7990092	7916443	NM_015306	USP24	0.844639	1.034337e-29	1.792196e-25	5.120560e-27
36	7990092	7988713	NM_017672	TRPM7	0.844295	1.148769e-29	1.990472e-25	5.529089e-27
37	7990092	8130038	NM_001042683	SHPRH	0.843704	1.374207e-29	2.381089e-25	6.435374e-27
38	7990092	8157534	NM_007018	CEP110	0.843555	1.437587e-29	2.490908e-25	6.555020e-27
39	7990092	8028227	NM_152604	ZNF383	0.842670	1.876865e-29	3.252045e-25	8.338576e-27
40	7990092	7943620	NM_000051	ATM	0.842404	2.033232e-29	3.522981e-25	8.807454e-27
41	7990092	7917103	NM_015534	ZZZ3	0.841896	2.367265e-29	4.101760e-25	1.000429e-26
42	7990092	8086077	NM_015097	CLASP2	0.841763	2.463304e-29	4.268167e-25	1.016230e-26
43	7990092	7969114	NM_031915	SETDB2	0.841656	2.543289e-29	4.406756e-25	1.024827e-26
44	7990092	7925531	NM_181690	AKT3	0.840807	3.274316e-29	5.673407e-25	1.289411e-26
45	7990092	8103106	NM_006726	LRBA	0.840623	3.458003e-29	5.991681e-25	1.331485e-26
46	7990092	8070341	NM_033656	BRWD1	0.840557	3.525696e-29	6.108973e-25	1.328038e-26
47	7990092	8047518	NM_015934	NOP58	0.840292	3.813145e-29	6.607036e-25	1.405752e-26
48	7990092	8092564	NM_004593	TRA2B	0.839875	4.313673e-29	7.474300e-25	1.557146e-26
49	7990092	8134180	NM_019004	ANKIB1	0.839349	5.035645e-29	8.725262e-25	1.780666e-26
50	7990092	8050367	NM_015909	NBAS	0.838720	6.054731e-29	1.049103e-24	2.098206e-26

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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