[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4363	7901788	NM_001134673	NFIA		nuclear factor I/A

Fetching correlation data, please wait...
Getting list of correlations for id 4363.
Getting list of p-values for id 4363.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.126 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7901788	8048523	NM_006736	DNAJB2	0.718403	6.295976e-18	1.090904e-13	1.090904e-13
2	7901788	8167360	NM_002049	GATA1	0.708370	2.864365e-17	4.963085e-13	2.481542e-13
3	7901788	8166723	NM_021083	XK	0.697545	1.369262e-16	2.372521e-12	7.908403e-13
4	7901788	8153652	NM_030974	SHARPIN	0.695134	1.921836e-16	3.329966e-12	8.324914e-13
5	7901788	8002262	ENST00000363109		0.682837	1.029815e-15	1.784360e-11	3.568720e-12
6	7901788	8164314	NM_175039	ST6GALNAC4	0.675665	2.640897e-15	4.575882e-11	7.626471e-12
7	7901788	7946757	NM_017508	SOX6	0.674247	3.171424e-15	5.495126e-11	7.850180e-12
8	7901788	8016590	NM_030802	FAM117A	0.669940	5.496673e-15	9.524086e-11	1.190511e-11
9	7901788	8007921	NM_001002841	MYL4	0.669537	5.784313e-15	1.002248e-10	1.113609e-11
10	7901788	8011131	NM_031430	RILP	0.663922	1.167567e-14	2.023044e-10	2.023044e-11
11	7901788	7979615	NM_001024858	SPTB	0.662562	1.380883e-14	2.392656e-10	2.175142e-11
12	7901788	7991758	NM_001003938	HBM	0.658083	2.385322e-14	4.133047e-10	3.444206e-11
13	7901788	8143534	NM_000420	KEL	0.657312	2.618514e-14	4.537100e-10	3.490077e-11
14	7901788	7998604	NM_005326	HAGH	0.655776	3.149958e-14	5.457931e-10	3.898522e-11
15	7901788	8063478	NM_080821	C20orf108	0.653817	3.980697e-14	6.897354e-10	4.598236e-11
16	7901788	8072382	NM_030758	OSBP2	0.646822	9.059009e-14	1.569654e-9	9.810341e-11
17	7901788	8164293	NM_000476	AK1	0.646178	9.760612e-14	1.691221e-9	9.948360e-11
18	7901788	8121782	ENST00000410632		0.645695	1.032211e-13	1.788512e-9	9.936175e-11
19	7901788	8026139	NM_002501	NFIX	0.645328	1.076906e-13	1.865955e-9	9.820813e-11
20	7901788	7983290	NM_001018108	SERF2	0.644087	1.242255e-13	2.152455e-9	1.076228e-10
21	7901788	7923967	NM_018566	YOD1	0.640872	1.793117e-13	3.106934e-9	1.479492e-10
22	7901788	7930398	NM_005962	MXI1	0.640735	1.821272e-13	3.155718e-9	1.434417e-10
23	7901788	8045009	NM_002101	GYPC	0.637866	2.517674e-13	4.362374e-9	1.896685e-10
24	7901788	7948511	NM_152718	VWCE	0.637638	2.583054e-13	4.475657e-9	1.864857e-10
25	7901788	8053447	ENST00000410372		0.637059	2.756074e-13	4.775449e-9	1.910180e-10
26	7901788	8026895	NM_138442	CCDC124	0.635650	3.225675e-13	5.589127e-9	2.149664e-10
27	7901788	7975368	NM_001039465	SRSF5	-0.635631	3.232403e-13	5.600784e-9	2.074365e-10
28	7901788	7996837	NM_004360	CDH1	0.632852	4.397900e-13	7.620242e-9	2.721515e-10
29	7901788	8075390	NM_174977	SEC14L4	0.632659	4.492695e-13	7.784493e-9	2.684308e-10
30	7901788	8100376			0.632152	4.750557e-13	8.231290e-9	2.743763e-10
31	7901788	8026361	ENST00000410914		0.632033	4.812824e-13	8.339180e-9	2.690058e-10
32	7901788	7995237	NM_016633	AHSP	0.631692	4.996405e-13	8.657271e-9	2.705397e-10
33	7901788	8135943	ENST00000364171		0.630332	5.798939e-13	1.004782e-8	3.044794e-10
34	7901788	8034608	NM_005583	LYL1	0.630234	5.861797e-13	1.015674e-8	2.987275e-10
35	7901788	8025766	NM_199141	CARM1	0.629443	6.389379e-13	1.107088e-8	3.163108e-10
36	7901788	8145005	NM_001978	EPB49	0.629218	6.547989e-13	1.134570e-8	3.151583e-10
37	7901788	8034578	NM_006563	KLF1	0.627426	7.952536e-13	1.377936e-8	3.724151e-10
38	7901788	8035494	NM_012181	FKBP8	0.626650	8.647414e-13	1.498337e-8	3.942993e-10
39	7901788	8025414	NM_004218	RAB11B	0.626454	8.832365e-13	1.530384e-8	3.924061e-10
40	7901788	7902043	NM_014787	DNAJC6	0.625577	9.705385e-13	1.681652e-8	4.204130e-10
41	7901788	8000217	NM_015092	SMG1	-0.625556	9.727713e-13	1.685521e-8	4.111026e-10
42	7901788	8096663	NM_001008388	CISD2	0.625280	1.001968e-12	1.736110e-8	4.133595e-10
43	7901788	8150439	NM_020476	ANK1	0.624373	1.104279e-12	1.913384e-8	4.449730e-10
44	7901788	8058869	NM_022648	TNS1	0.623821	1.171302e-12	2.029514e-8	4.612532e-10
45	7901788	8003298	NM_003486	SLC7A5	0.623329	1.234447e-12	2.138927e-8	4.753171e-10
46	7901788	8016504	ENST00000410206		0.622997	1.278809e-12	2.215792e-8	4.816939e-10
47	7901788	7898607	ENST00000410622		0.621441	1.508445e-12	2.613683e-8	5.561027e-10
48	7901788	7999217	NM_024589	ROGDI	0.620573	1.653329e-12	2.864723e-8	5.968173e-10
49	7901788	8004545	NM_001678	ATP1B2	0.619841	1.785689e-12	3.094063e-8	6.314415e-10
50	7901788	8164336	NM_003863	DPM2	0.619793	1.794810e-12	3.109868e-8	6.219735e-10

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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