[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2833	8008517	NM_198175	NME1		non-metastatic cells 1, protein (NM23A) expressed in

Fetching correlation data, please wait...
Getting list of correlations for id 2833.
Getting list of p-values for id 2833.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.123 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8008517	8029536	NM_001645	APOC1	0.601630	1.142428e-11	1.979486e-7	1.979486e-7
2	8008517	7905092	NM_016074	BOLA1	0.581712	7.639617e-11	1.323716e-6	6.618582e-7
3	8008517	7928645	NM_001099338	FAM22A	0.563505	3.891522e-10	6.742840e-6	2.247613e-6
4	8008517	7991138	NM_021077	NMB	0.561774	4.519877e-10	7.831590e-6	1.957898e-6
5	8008517	8177011	NM_004192	ASMTL	0.553695	8.987857e-10	1.557326e-5	3.114652e-6
6	8008517	8171119	NM_004192	ASMTL	0.552203	1.018384e-9	1.764554e-5	2.940923e-6
7	8008517	8003962	NM_002663	PLD2	0.549351	1.290968e-9	2.236860e-5	3.195514e-6
8	8008517	8138088	NM_001037163	C7orf70	0.549154	1.312170e-9	2.273597e-5	2.841996e-6
9	8008517	7947609	NM_004813	PEX16	0.545468	1.776523e-9	3.078182e-5	3.420202e-6
10	8008517	7928653	NM_001099338	FAM22A	0.543464	2.091446e-9	3.623848e-5	3.623848e-6
11	8008517	8104693	NM_178140	PDZD2	0.538362	3.153772e-9	5.464540e-5	4.967764e-6
12	8008517	8130859	NM_214462	DACT2	0.537325	3.425361e-9	5.935123e-5	4.945936e-6
13	8008517	8146906			0.535054	4.101126e-9	7.106020e-5	5.466170e-6
14	8008517	8001748	NR_002980	SNORA50	-0.533306	4.706221e-9	8.154469e-5	5.824621e-6
15	8008517	8126452	NM_000287	PEX6	0.531817	5.288708e-9	9.163744e-5	6.109163e-6
16	8008517	8024347	NM_079834	SCAMP4	0.530339	5.934423e-9	1.028258e-4	6.426610e-6
17	8008517	7983663	NM_005154	USP8	-0.525684	8.500193e-9	1.472828e-4	8.663697e-6
18	8008517	8112070	ENST00000364499		-0.525425	8.670189e-9	1.502284e-4	8.346020e-6
19	8008517	7914667	NM_052896	CSMD2	0.524627	9.215512e-9	1.596772e-4	8.404062e-6
20	8008517	8038069	NM_018273	TMEM143	0.523881	9.755104e-9	1.690267e-4	8.451335e-6
21	8008517	7992584	NM_001374	DNASE1L2	0.523412	1.010973e-8	1.751712e-4	8.341487e-6
22	8008517	8013833	NM_178860	SEZ6	0.520729	1.238687e-8	2.146273e-4	9.755786e-6
23	8008517	8111212	ENST00000453298		0.520242	1.284956e-8	2.226444e-4	9.680191e-6
24	8008517	8112072	NM_021147	CCNO	0.519998	1.308803e-8	2.267763e-4	9.449014e-6
25	8008517	8049919	NM_152783	D2HGDH	0.519953	1.313247e-8	2.275463e-4	9.101854e-6
26	8008517	7977888	NM_022478	CDH24	0.519933	1.315152e-8	2.278763e-4	8.764475e-6
27	8008517	8084219	NM_017644	KLHL24	-0.519882	1.320212e-8	2.287532e-4	8.472340e-6
28	8008517	7994216	NM_052944	SLC5A11	0.517989	1.521512e-8	2.636325e-4	9.415445e-6
29	8008517	7996651	NM_001012984	C16orf86	0.516425	1.709659e-8	2.962326e-4	1.021492e-5
30	8008517	7949046	NM_001033678	TRPT1	0.515517	1.828826e-8	3.168807e-4	1.056269e-5
31	8008517	7991779	NM_032039	ITFG3	0.513687	2.093762e-8	3.627862e-4	1.170278e-5
32	8008517	8032365	NM_031918	KLF16	0.513681	2.094714e-8	3.629510e-4	1.134222e-5
33	8008517	8042119	NM_022894	PAPOLG	-0.513056	2.193297e-8	3.800326e-4	1.151614e-5
34	8008517	8001946	NM_001040715	KIAA0895L	0.511401	2.476394e-8	4.290848e-4	1.262014e-5
35	8008517	8077528	NM_001080517	SETD5	-0.510788	2.589919e-8	4.487553e-4	1.282158e-5
36	8008517	7940781	NM_201428	RTN3	-0.510645	2.617050e-8	4.534562e-4	1.259601e-5
37	8008517	8074020	NM_031454	SELO	0.510463	2.652119e-8	4.595326e-4	1.241980e-5
38	8008517	8003332	NM_002461	MVD	0.509694	2.804819e-8	4.859910e-4	1.278924e-5
39	8008517	8024089	NM_024100	WDR18	0.509650	2.813839e-8	4.875538e-4	1.250138e-5
40	8008517	8002029	NM_013304	ZDHHC1	0.509566	2.831148e-8	4.905531e-4	1.226383e-5
41	8008517	7897714	NM_001014765	FBXO44	0.507939	3.185844e-8	5.520112e-4	1.346369e-5
42	8008517	8114658	NM_005219	DIAPH1	-0.507247	3.348981e-8	5.802780e-4	1.381614e-5
43	8008517	8025868	NM_001080503	CCDC159	0.507078	3.390110e-8	5.874044e-4	1.366057e-5
44	8008517	8012079	NM_004422	DVL2	0.506861	3.443564e-8	5.966663e-4	1.356060e-5
45	8008517	8039809	NM_198055	MZF1	0.505635	3.761380e-8	6.517344e-4	1.448299e-5
46	8008517	8071020	NM_058180	C21orf58	0.505170	3.888977e-8	6.738431e-4	1.464876e-5
47	8008517	8177709	NM_206809	MOG	0.504137	4.187482e-8	7.255650e-4	1.543755e-5
48	8008517	8071368	NR_026815	TMEM191A	0.503773	4.297772e-8	7.446750e-4	1.551406e-5
49	8008517	8062064	NM_020884	MYH7B	0.503486	4.386752e-8	7.600926e-4	1.551209e-5
50	8008517	8037788	NM_145056	DACT3	0.503252	4.460404e-8	7.728542e-4	1.545708e-5

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
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