[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2899	8170590	NM_015922	NSDHL		NAD(P) dependent steroid dehydrogenase-like

Fetching correlation data, please wait...
Getting list of correlations for id 2899.
Getting list of p-values for id 2899.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.088 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8170590	8061706	NM_015352	POFUT1	0.481626	1.977615e-7	3.426614e-3	3.426614e-3
2	8170590	8045171	NM_033416	IMP4	0.479665	2.252269e-7	3.902506e-3	1.951253e-3
3	8170590	8065868	NM_002212	EIF6	0.446013	1.857344e-6	3.218219e-2	1.072740e-2
4	8170590	7912303	NM_213566	DFFA	0.445749	1.886681e-6	3.269052e-2	8.172629e-3
5	8170590	7904869	NM_001130111	FAM108A1	0.420588	7.926504e-6	1.373425e-1	2.746851e-2
6	8170590	7904948	NM_001130111	FAM108A1	0.420588	7.926504e-6	1.373425e-1	2.289042e-2
7	8170590	8163930	NM_014222	NDUFA8	0.419273	8.517062e-6	1.475751e-1	2.108216e-2
8	8170590	8075406	NM_014303	PES1	0.411212	1.314881e-5	2.278294e-1	2.847868e-2
9	8170590	8079993	NM_007022	CYB561D2	0.409266	1.457786e-5	2.525905e-1	2.806562e-2
10	8170590	7945101	NM_014026	DCPS	0.409190	1.463662e-5	2.536088e-1	2.536088e-2
11	8170590	8158406	NM_018201	TBC1D13	0.408710	1.501254e-5	2.601222e-1	2.364748e-2
12	8170590	8171336	ENST00000411014		-0.407248	1.621333e-5	2.809283e-1	2.341070e-2
13	8170590	8170288			0.404210	1.900224e-5	3.292518e-1	2.532706e-2
14	8170590	8148728	NM_001916	CYC1	0.404114	1.909772e-5	3.309062e-1	2.363616e-2
15	8170590	8135856	NM_001662	ARF5	0.401284	2.210950e-5	3.830912e-1	2.553942e-2
16	8170590	8003824	NM_004937	CTNS	0.400028	2.358509e-5	4.086588e-1	2.554118e-2
17	8170590	7939825	NM_004551	NDUFS3	0.399113	2.471657e-5	4.282641e-1	2.519200e-2
18	8170590	7900087	NM_017825	ADPRHL2	0.398531	2.546231e-5	4.411854e-1	2.451030e-2
19	8170590	7992987	NM_001127204	HMOX2	0.398057	2.608557e-5	4.519847e-1	2.378867e-2
20	8170590	8045301	NM_017751	SMPD4	0.396825	2.777349e-5	4.812313e-1	2.406156e-2
21	8170590	8036242	NM_032878	ALKBH6	0.396799	2.781053e-5	4.818730e-1	2.294633e-2
22	8170590	8028756	NM_006503	PSMC4	0.396617	2.806880e-5	4.863480e-1	2.210673e-2
23	8170590	7924230	NM_001130111	FAM108A1	0.394172	3.176132e-5	5.503284e-1	2.392732e-2
24	8170590	8016552	NM_002634	PHB	0.390502	3.816733e-5	6.613253e-1	2.755522e-2
25	8170590	8164653	NM_031432	UCK1	0.389844	3.943571e-5	6.833025e-1	2.733210e-2
26	8170590	7943218	NM_015368	PANX1	0.389423	4.026869e-5	6.977355e-1	2.683598e-2
27	8170590	7906072	NM_014017	ROBLD3	0.388738	4.165856e-5	7.218178e-1	2.673399e-2
28	8170590	8130003	NM_031287	SF3B5	0.387935	4.334345e-5	7.510119e-1	2.682185e-2
29	8170590	7973371	BC009645	C14orf119	0.386842	4.574227e-5	7.925764e-1	2.733022e-2
30	8170590	7960863			0.384733	5.072232e-5	8.788657e-1	2.929552e-2
31	8170590	7914750	BC034598	C1orf212	0.381782	5.854718e-5	1.014447e+0	3.272410e-2
32	8170590	8026541	AF151902	FAM32A	0.381502	5.934418e-5	1.028257e+0	3.213302e-2
33	8170590	7915485	NM_006824	EBNA1BP2	0.378799	6.758949e-5	1.171123e+0	3.548858e-2
34	8170590	8053158	NM_006302	MOGS	0.378345	6.907320e-5	1.196831e+0	3.520092e-2
35	8170590	8031792	NM_006385	ZNF211	0.377858	7.069970e-5	1.225014e+0	3.500039e-2
36	8170590	8137680	NM_006869	ADAP1	0.377568	7.168742e-5	1.242128e+0	3.450355e-2
37	8170590	7913694	NM_000147	FUCA1	0.377357	7.241279e-5	1.254696e+0	3.391071e-2
38	8170590	7949518	NM_198897	FIBP	0.376065	7.700345e-5	1.334239e+0	3.511155e-2
39	8170590	8021727	NM_018235	CNDP2	0.375033	8.086445e-5	1.401138e+0	3.592662e-2
40	8170590	8116168	NM_017838	NHP2	0.375020	8.091476e-5	1.402010e+0	3.505025e-2
41	8170590	8023920	NM_006701	TXNL4A	0.374777	8.185035e-5	1.418221e+0	3.459076e-2
42	8170590	7906443	NM_002001	FCER1A	0.374173	8.421883e-5	1.459260e+0	3.474428e-2
43	8170590	8093829	NM_145291	ZBTB49	0.373770	8.583410e-5	1.487247e+0	3.458715e-2
44	8170590	7941936	NM_000852	GSTP1	0.372032	9.314186e-5	1.613869e+0	3.667884e-2
45	8170590	7948476	NM_014502	PRPF19	0.371624	9.493794e-5	1.644990e+0	3.655533e-2
46	8170590	8159441	NM_001135861	PHPT1	0.371492	9.552747e-5	1.655204e+0	3.598271e-2
47	8170590	8019296	NM_016538	SIRT7	0.370387	1.005852e-4	1.742839e+0	3.708168e-2
48	8170590	8050060	NM_003310	TSSC1	0.370197	1.014805e-4	1.758352e+0	3.663234e-2
49	8170590	7899134	NM_022778	CCDC21	0.368206	1.113113e-4	1.928691e+0	3.936104e-2
50	8170590	8176230	NM_171998	RAB39B	0.367355	1.157777e-4	2.006081e+0	4.012161e-2

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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