[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3862	8075406	NM_014303	PES1		pescadillo homolog 1, containing BRCT domain (zebrafish)

Fetching correlation data, please wait...
Getting list of correlations for id 3862.
Getting list of p-values for id 3862.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.112 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8075406	8037847	NM_004069	AP2S1	0.558838	5.814804e-10	1.007531e-5	1.007531e-5
2	8075406	8025788	NM_001128849	SMARCA4	0.555883	7.474606e-10	1.295125e-5	6.475625e-6
3	8075406	7987772	NM_139265	EHD4	0.544395	1.939086e-9	3.359855e-5	1.119952e-5
4	8075406	8115907	NM_016391	NOP16	0.538731	3.062158e-9	5.305802e-5	1.326450e-5
5	8075406	8148728	NM_001916	CYC1	0.537150	3.473548e-9	6.018616e-5	1.203723e-5
6	8075406	7953483	NM_001098536	USP5	0.534729	4.207561e-9	7.290441e-5	1.215073e-5
7	8075406	8037023	NM_020158	EXOSC5	0.534481	4.290603e-9	7.434327e-5	1.062047e-5
8	8075406	7948881	NM_018093	WDR74	0.533293	4.711183e-9	8.163067e-5	1.020383e-5
9	8075406	8172548	NM_015698	GPKOW	0.519588	1.349723e-8	2.338665e-4	2.598517e-5
10	8075406	7977409	NM_001311	CRIP1	0.515252	1.865164e-8	3.231769e-4	3.231769e-5
11	8075406	8159249	NM_016034	MRPS2	0.515172	1.876173e-8	3.250845e-4	2.955313e-5
12	8075406	8116595	NM_020135	WRNIP1	0.514648	1.950342e-8	3.379358e-4	2.816132e-5
13	8075406	8033002	NM_004793	LONP1	0.513653	2.098998e-8	3.636934e-4	2.797642e-5
14	8075406	8035449	NM_012321	LSM4	0.513227	2.165890e-8	3.752838e-4	2.680598e-5
15	8075406	8098723	ENST00000364275		0.510862	2.575839e-8	4.463156e-4	2.975438e-5
16	8075406	8034615	NM_017722	TRMT1	0.504966	3.946111e-8	6.837426e-4	4.273391e-5
17	8075406	8063893	NM_007002	ADRM1	0.504586	4.055106e-8	7.026283e-4	4.133108e-5
18	8075406	8042859	NM_031288	INO80B	0.500666	5.358945e-8	9.285444e-4	5.158580e-5
19	8075406	8130003	NM_031287	SF3B5	0.500534	5.409182e-8	9.372489e-4	4.932889e-5
20	8075406	8074498	NM_006440	TXNRD2	0.500166	5.551625e-8	9.619300e-4	4.809650e-5
21	8075406	8138067	NM_004227	CYTH3	0.496845	7.009398e-8	1.214518e-3	5.783421e-5
22	8075406	8033135	NM_002096	GTF2F1	0.496829	7.016798e-8	1.215801e-3	5.526367e-5
23	8075406	8024708	NM_172251	MRPL54	0.494032	8.523063e-8	1.476791e-3	6.420831e-5
24	8075406	7945101	NM_014026	DCPS	0.492853	9.246302e-8	1.602107e-3	6.675444e-5
25	8075406	8037505	NM_024108	TRAPPC6A	0.492465	9.496535e-8	1.645465e-3	6.581859e-5
26	8075406	8026806	NM_024656	GLT25D1	0.488485	1.246846e-7	2.160410e-3	8.309267e-5
27	8075406	8033392	NM_020196	XAB2	0.488104	1.279547e-7	2.217071e-3	8.211373e-5
28	8075406	8030035	NM_031485	GRWD1	0.487697	1.315448e-7	2.279276e-3	8.140271e-5
29	8075406	7904869	NM_001130111	FAM108A1	0.484607	1.620455e-7	2.807763e-3	9.681941e-5
30	8075406	7904948	NM_001130111	FAM108A1	0.484607	1.620455e-7	2.807763e-3	9.359209e-5
31	8075406	7992021	NM_005861	STUB1	0.480204	2.173350e-7	3.765763e-3	1.214762e-4
32	8075406	8117881	NM_024839	RPP21	0.479972	2.207061e-7	3.824175e-3	1.195055e-4
33	8075406	7941900	NM_003952	RPS6KB2	0.478404	2.447687e-7	4.241107e-3	1.285184e-4
34	8075406	8026895	NM_138442	CCDC124	0.477320	2.628331e-7	4.554110e-3	1.339444e-4
35	8075406	7941296	NM_006396	SSSCA1	0.476156	2.836634e-7	4.915035e-3	1.404296e-4
36	8075406	7941460	NM_006442	DRAP1	0.475857	2.892594e-7	5.011997e-3	1.392221e-4
37	8075406	8029814	NM_006247	PPP5C	0.475654	2.931237e-7	5.078955e-3	1.372690e-4
38	8075406	7911422	NM_016547	SDF4	0.473582	3.354028e-7	5.811524e-3	1.529349e-4
39	8075406	7911730	NM_018216	PANK4	0.473416	3.390343e-7	5.874448e-3	1.506269e-4
40	8075406	8084219	NM_017644	KLHL24	-0.472931	3.498582e-7	6.061992e-3	1.515498e-4
41	8075406	7979455	NM_021136	RTN1	0.472019	3.710993e-7	6.430037e-3	1.568302e-4
42	8075406	8025368	NM_003083	SNAPC2	0.471079	3.942600e-7	6.831343e-3	1.626510e-4
43	8075406	8036136	NM_024660	TMEM149	0.470510	4.089426e-7	7.085749e-3	1.647849e-4
44	8075406	7906995	NM_012474	UCK2	0.467969	4.810900e-7	8.335846e-3	1.894511e-4
45	8075406	8157324	NM_144488	RGS3	0.467252	5.035652e-7	8.725274e-3	1.938950e-4
46	8075406	8137680	NM_006869	ADAP1	0.466484	5.287108e-7	9.160972e-3	1.991516e-4
47	8075406	8074842	NM_001130111	FAM108A1	0.464492	5.996354e-7	1.038988e-2	2.210613e-4
48	8075406	8025035	NM_032306	ALKBH7	0.463282	6.470423e-7	1.121130e-2	2.335688e-4
49	8075406	8122259	ENST00000384518		-0.461118	7.407868e-7	1.283561e-2	2.619513e-4
50	8075406	8013109	ENST00000392730		0.460498	7.699337e-7	1.334064e-2	2.668128e-4

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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