[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5051	7906995	NM_012474	UCK2		uridine-cytidine kinase 2

Fetching correlation data, please wait...
Getting list of correlations for id 5051.
Getting list of p-values for id 5051.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.089 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7906995	8170906	NM_004699	FAM50A	0.592317	2.822919e-11	4.891273e-7	4.891273e-7
2	7906995	8159541	BC002613	C9orf142	0.549640	1.260460e-9	2.184000e-5	1.092000e-5
3	7906995	7992021	NM_005861	STUB1	0.530633	5.800012e-9	1.004968e-4	3.349894e-5
4	7906995	8172548	NM_015698	GPKOW	0.530374	5.918297e-9	1.025463e-4	2.563658e-5
5	7906995	7987772	NM_139265	EHD4	0.528544	6.820528e-9	1.181793e-4	2.363586e-5
6	7906995	8138067	NM_004227	CYTH3	0.523292	1.020229e-8	1.767751e-4	2.946252e-5
7	7906995	8090591	NM_015103	PLXND1	0.521212	1.194370e-8	2.069486e-4	2.956408e-5
8	7906995	7952179	NM_002105	H2AFX	0.520518	1.258547e-8	2.180685e-4	2.725857e-5
9	7906995	8027805	NM_003367	USF2	0.516492	1.701124e-8	2.947537e-4	3.275041e-5
10	7906995	8053584	NR_027353	CD8A	0.516043	1.758825e-8	3.047517e-4	3.047517e-5
11	7906995	7945740	NM_016093	RPL26L1	0.514106	2.030070e-8	3.517503e-4	3.197730e-5
12	7906995	8037847	NM_004069	AP2S1	0.509406	2.864223e-8	4.962840e-4	4.135700e-5
13	7906995	8016452	NM_024015	HOXB4	0.504989	3.939707e-8	6.826330e-4	5.251023e-5
14	7906995	8115918	NM_007097	CLTB	0.502675	4.647639e-8	8.052964e-4	5.752117e-5
15	7906995	7992255	NM_032520	GNPTG	0.502132	4.830539e-8	8.369875e-4	5.579917e-5
16	7906995	8068938	NM_003683	RRP1	0.499268	5.914335e-8	1.024777e-3	6.404856e-5
17	7906995	8026895	NM_138442	CCDC124	0.499175	5.953077e-8	1.031490e-3	6.067586e-5
18	7906995	7941900	NM_003952	RPS6KB2	0.498671	6.168075e-8	1.068742e-3	5.937458e-5
19	7906995	8016508	NM_007241	SNF8	0.496364	7.248343e-8	1.255920e-3	6.610107e-5
20	7906995	8074003	NM_025204	TRABD	0.496204	7.329476e-8	1.269978e-3	6.349892e-5
21	7906995	8129937	NM_006079	CITED2	0.494289	8.372613e-8	1.450723e-3	6.908203e-5
22	7906995	7915277	NM_005376	MYCL1	0.492373	9.556630e-8	1.655877e-3	7.526715e-5
23	7906995	7900095	NM_018067	MAP7D1	0.484733	1.606705e-7	2.783937e-3	1.210407e-4
24	7906995	8080084	NM_006010	MANF	0.484402	1.642845e-7	2.846557e-3	1.186065e-4
25	7906995	8074498	NM_006440	TXNRD2	0.480525	2.127668e-7	3.686610e-3	1.474644e-4
26	7906995	8037816	NM_013403	STRN4	0.479097	2.338437e-7	4.051809e-3	1.558388e-4
27	7906995	8172453	NM_005834	TIMM17B	0.478148	2.489267e-7	4.313152e-3	1.597464e-4
28	7906995	8000948	NM_004765	BCL7C	0.477414	2.612175e-7	4.526116e-3	1.616470e-4
29	7906995	8032076	NM_194460	RNF126	0.474779	3.103180e-7	5.376881e-3	1.854097e-4
30	7906995	7949776	NM_020441	CORO1B	0.474727	3.113674e-7	5.395064e-3	1.798355e-4
31	7906995	8000899	NM_024671	ZNF768	0.474582	3.143173e-7	5.446176e-3	1.756831e-4
32	7906995	8149638	NM_003974	DOK2	0.473371	3.400368e-7	5.891817e-3	1.841193e-4
33	7906995	8029814	NM_006247	PPP5C	0.472980	3.487457e-7	6.042717e-3	1.831126e-4
34	7906995	8148728	NM_001916	CYC1	0.472919	3.501283e-7	6.066673e-3	1.784316e-4
35	7906995	8179364	NM_006929	SKIV2L	0.472225	3.661887e-7	6.344952e-3	1.812843e-4
36	7906995	8165622	NM_138462	ZMYND19	0.471522	3.831646e-7	6.639094e-3	1.844193e-4
37	7906995	7911422	NM_016547	SDF4	0.471105	3.936003e-7	6.819912e-3	1.843220e-4
38	7906995	8157324	NM_144488	RGS3	0.470932	3.980044e-7	6.896222e-3	1.814795e-4
39	7906995	8025788	NM_001128849	SMARCA4	0.468785	4.567142e-7	7.913488e-3	2.029099e-4
40	7906995	8075406	NM_014303	PES1	0.467969	4.810900e-7	8.335846e-3	2.083962e-4
41	7906995	7966259	NM_016433	GLTP	0.467374	4.996636e-7	8.657671e-3	2.111627e-4
42	7906995	8087640	NM_007182	RASSF1	0.467259	5.033443e-7	8.721447e-3	2.076535e-4
43	7906995	8165430	NM_178448	C9orf140	0.465694	5.558323e-7	9.630906e-3	2.239745e-4
44	7906995	7913237	NM_018584	CAMK2N1	0.463824	6.253576e-7	1.083557e-2	2.462630e-4
45	7906995	8008016	NM_014726	TBKBP1	0.463114	6.539036e-7	1.133019e-2	2.517819e-4
46	7906995	8013919	NM_198147	ABHD15	0.463073	6.555741e-7	1.135913e-2	2.469377e-4
47	7906995	8008029	NM_013351	TBX21	0.462438	6.821908e-7	1.182032e-2	2.514962e-4
48	7906995	8178136	NM_006929	SKIV2L	0.462417	6.830694e-7	1.183554e-2	2.465738e-4
49	7906995	8118367	NM_006929	SKIV2L	0.462417	6.830694e-7	1.183554e-2	2.415417e-4
50	7906995	8042859	NM_031288	INO80B	0.462311	6.876081e-7	1.191418e-2	2.382837e-4

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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