[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 8813.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
8813	8178136	NM_006929	SKIV2L		superkiller viralicidic activity 2-like (S. cerevisiae)

Fetching correlation data, please wait...
Getting list of correlations for id 8813.
Getting list of p-values for id 8813.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.087 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8178136	8118367	NM_006929	SKIV2L	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8178136	8179364	NM_006929	SKIV2L	0.980883	4.834460e-75	8.376670e-71	4.188335e-71
3	8178136	8110327	NM_006480	RGS14	0.616811	2.452032e-12	4.248635e-8	1.416212e-8
4	8178136	8016215	NM_199282	ARHGAP27	0.607875	6.126728e-12	1.061578e-7	2.653945e-8
5	8178136	7899323	NM_032872	SYTL1	0.594880	2.207274e-11	3.824544e-7	7.649088e-8
6	8178136	8025199	NM_006702	PNPLA6	0.588203	4.171413e-11	7.227808e-7	1.204635e-7
7	8178136	8159692	NM_152285	ARRDC1	0.583316	6.586786e-11	1.141292e-6	1.630418e-7
8	8178136	7996571	NM_024519	FAM65A	0.581808	7.571951e-11	1.311992e-6	1.639990e-7
9	8178136	8010638	NM_004712	HGS	0.581184	8.019882e-11	1.389605e-6	1.544006e-7
10	8178136	7942439	NM_032871	RELT	0.580591	8.469651e-11	1.467536e-6	1.467536e-7
11	8178136	8090420	NM_016372	TPRA1	0.575304	1.370441e-10	2.374563e-6	2.158693e-7
12	8178136	7985099	NM_003978	PSTPIP1	0.574645	1.454268e-10	2.519810e-6	2.099842e-7
13	8178136	7937150	NM_001109	ADAM8	0.567611	2.719145e-10	4.711462e-6	3.624202e-7
14	8178136	8063097	NM_022104	PCIF1	0.567558	2.731736e-10	4.733279e-6	3.380914e-7
15	8178136	8138067	NM_004227	CYTH3	0.561104	4.788522e-10	8.297072e-6	5.531381e-7
16	8178136	8165462	NM_013366	ANAPC2	0.559080	5.696281e-10	9.869945e-6	6.168716e-7
17	8178136	8036136	NM_024660	TMEM149	0.555547	7.690291e-10	1.332497e-5	7.838216e-7
18	8178136	8018449	NM_199242	UNC13D	0.552222	1.016805e-9	1.761818e-5	9.787875e-7
19	8178136	8019296	NM_016538	SIRT7	0.551564	1.074203e-9	1.861272e-5	9.796168e-7
20	8178136	8023344	NM_001101654	CXXC1	0.547930	1.451658e-9	2.515288e-5	1.257644e-6
21	8178136	7992255	NM_032520	GNPTG	0.544694	1.892424e-9	3.279003e-5	1.561430e-6
22	8178136	8007594	NM_177441	TMUB2	0.540653	2.624904e-9	4.548171e-5	2.067351e-6
23	8178136	8030321	NM_153329	ALDH16A1	0.539387	2.905549e-9	5.034445e-5	2.188889e-6
24	8178136	7959123	NM_006253	PRKAB1	0.535608	3.925212e-9	6.801215e-5	2.833840e-6
25	8178136	7999120	NM_024535	CORO7	0.535439	3.978259e-9	6.893129e-5	2.757251e-6
26	8178136	8037389	NM_019108	C19orf61	0.535434	3.979661e-9	6.895559e-5	2.652138e-6
27	8178136	8125687	NM_004761	RGL2	0.534427	4.309039e-9	7.466272e-5	2.765286e-6
28	8178136	7911422	NM_016547	SDF4	0.533581	4.605809e-9	7.980486e-5	2.850174e-6
29	8178136	8170865	NM_000116	TAZ	0.533186	4.750891e-9	8.231868e-5	2.838575e-6
30	8178136	8037816	NM_013403	STRN4	0.532653	4.953629e-9	8.583153e-5	2.861051e-6
31	8178136	8116177	NM_153373	AGXT2L2	0.531953	5.232670e-9	9.066648e-5	2.924725e-6
32	8178136	8024170	NM_012292	HMHA1	0.531311	5.501712e-9	9.532817e-5	2.979005e-6
33	8178136	8026830	NM_015122	FCHO1	0.530899	5.681386e-9	9.844138e-5	2.983072e-6
34	8178136	8080320	NM_007184	NISCH	0.530755	5.745233e-9	9.954765e-5	2.927872e-6
35	8178136	8175900	NM_001666	ARHGAP4	0.530494	5.863170e-9	1.015911e-4	2.902604e-6
36	8178136	7941311	NM_153253	SIPA1	0.530090	6.050343e-9	1.048343e-4	2.912064e-6
37	8178136	8024637	NM_001136198	FZR1	0.529920	6.130709e-9	1.062268e-4	2.870994e-6
38	8178136	8033118	NM_005934	MLLT1	0.529191	6.487612e-9	1.124109e-4	2.958180e-6
39	8178136	8026548	NM_001130524	AP1M1	0.528691	6.743784e-9	1.168495e-4	2.996142e-6
40	8178136	8024120	NM_019112	ABCA7	0.527375	7.464830e-9	1.293431e-4	3.233578e-6
41	8178136	8039316	NM_017607	PPP1R12C	0.525120	8.874709e-9	1.537721e-4	3.750538e-6
42	8178136	8016628	NM_032595	PPP1R9B	0.521789	1.143419e-8	1.981201e-4	4.717146e-6
43	8178136	8076185	NM_175709	CBX7	0.521760	1.145892e-8	1.985488e-4	4.617413e-6
44	8178136	8093624	NM_001145856	SH3BP2	0.518841	1.427583e-8	2.473573e-4	5.621757e-6
45	8178136	8060030	NM_006037	HDAC4	0.518244	1.492829e-8	2.586625e-4	5.748056e-6
46	8178136	8029147	NM_199002	ARHGEF1	0.518072	1.512075e-8	2.619972e-4	5.695591e-6
47	8178136	8001981	NM_013241	FHOD1	0.517901	1.531510e-8	2.653648e-4	5.646060e-6
48	8178136	8011516	NM_174954	ATP2A3	0.517161	1.618487e-8	2.804353e-4	5.842402e-6
49	8178136	8087885	NM_004656	BAP1	0.516454	1.705992e-8	2.955973e-4	6.032597e-6
50	8178136	8126312	NM_007162	TFEB	0.515345	1.852314e-8	3.209505e-4	6.419010e-6

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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