[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 9396.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
9396	8179364	NM_006929	SKIV2L		superkiller viralicidic activity 2-like (S. cerevisiae)

Fetching correlation data, please wait...
Getting list of correlations for id 9396.
Getting list of p-values for id 9396.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.083 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8179364	8118367	NM_006929	SKIV2L	0.980883	4.834460e-75	8.376670e-71	8.376670e-71
2	8179364	8178136	NM_006929	SKIV2L	0.980883	4.834460e-75	8.376670e-71	4.188335e-71
3	8179364	8159692	NM_152285	ARRDC1	0.626167	9.109112e-13	1.578336e-8	5.261119e-9
4	8179364	8016215	NM_199282	ARHGAP27	0.625209	1.009708e-12	1.749521e-8	4.373803e-9
5	8179364	8110327	NM_006480	RGS14	0.621649	1.475597e-12	2.556766e-8	5.113533e-9
6	8179364	7985099	NM_003978	PSTPIP1	0.616439	2.548827e-12	4.416353e-8	7.360588e-9
7	8179364	8025199	NM_006702	PNPLA6	0.606527	7.016936e-12	1.215824e-7	1.736892e-8
8	8179364	7899323	NM_032872	SYTL1	0.600584	1.266502e-11	2.194467e-7	2.743084e-8
9	8179364	8024170	NM_012292	HMHA1	0.590528	3.347775e-11	5.800691e-7	6.445212e-8
10	8179364	8063097	NM_022104	PCIF1	0.589384	3.731066e-11	6.464818e-7	6.464818e-8
11	8179364	7942439	NM_032871	RELT	0.586889	4.719905e-11	8.178180e-7	7.434709e-8
12	8179364	8010638	NM_004712	HGS	0.586800	4.759517e-11	8.246814e-7	6.872345e-8
13	8179364	8018449	NM_199242	UNC13D	0.586725	4.793423e-11	8.305564e-7	6.388895e-8
14	8179364	8125687	NM_004761	RGL2	0.580591	8.469365e-11	1.467487e-6	1.048205e-7
15	8179364	8023344	NM_001101654	CXXC1	0.580202	8.777447e-11	1.520868e-6	1.013912e-7
16	8179364	8007594	NM_177441	TMUB2	0.579677	9.209991e-11	1.595815e-6	9.973845e-8
17	8179364	7937150	NM_001109	ADAM8	0.579123	9.688987e-11	1.678811e-6	9.875357e-8
18	8179364	8026548	NM_001130524	AP1M1	0.577694	1.103644e-10	1.912284e-6	1.062380e-7
19	8179364	8116177	NM_153373	AGXT2L2	0.575910	1.297433e-10	2.248062e-6	1.183191e-7
20	8179364	8019296	NM_016538	SIRT7	0.573739	1.577650e-10	2.733594e-6	1.366797e-7
21	8179364	8037389	NM_019108	C19orf61	0.573139	1.664943e-10	2.884846e-6	1.373736e-7
22	8179364	8138067	NM_004227	CYTH3	0.569834	2.234819e-10	3.872271e-6	1.760123e-7
23	8179364	8036136	NM_024660	TMEM149	0.568876	2.432398e-10	4.214616e-6	1.832442e-7
24	8179364	7941311	NM_153253	SIPA1	0.567357	2.780490e-10	4.817755e-6	2.007398e-7
25	8179364	7996571	NM_024519	FAM65A	0.566296	3.051653e-10	5.287598e-6	2.115039e-7
26	8179364	7992255	NM_032520	GNPTG	0.565332	3.319735e-10	5.752105e-6	2.212348e-7
27	8179364	8013191	NM_002018	FLII	0.564672	3.516442e-10	6.092939e-6	2.256644e-7
28	8179364	8029147	NM_199002	ARHGEF1	0.564551	3.553521e-10	6.157186e-6	2.198995e-7
29	8179364	7911422	NM_016547	SDF4	0.563560	3.873263e-10	6.711203e-6	2.314208e-7
30	8179364	7959123	NM_006253	PRKAB1	0.562550	4.227268e-10	7.324587e-6	2.441529e-7
31	8179364	8087885	NM_004656	BAP1	0.562459	4.260465e-10	7.382107e-6	2.381325e-7
32	8179364	8016628	NM_032595	PPP1R9B	0.561291	4.712157e-10	8.164754e-6	2.551486e-7
33	8179364	8077595	NM_001003694	BRPF1	0.561046	4.812289e-10	8.338254e-6	2.526743e-7
34	8179364	8011516	NM_174954	ATP2A3	0.559336	5.572942e-10	9.656237e-6	2.840070e-7
35	8179364	8180144	NM_004761	RGL2	0.557569	6.478808e-10	1.122583e-5	3.207380e-7
36	8179364	8178955	NM_004761	RGL2	0.557569	6.478808e-10	1.122583e-5	3.118286e-7
37	8179364	8165462	NM_013366	ANAPC2	0.555067	8.008054e-10	1.387556e-5	3.750150e-7
38	8179364	8076185	NM_175709	CBX7	0.554666	8.282991e-10	1.435194e-5	3.776826e-7
39	8179364	7999120	NM_024535	CORO7	0.553619	9.045439e-10	1.567303e-5	4.018726e-7
40	8179364	8079462	NM_015175	NBEAL2	0.549263	1.300372e-9	2.253155e-5	5.632888e-7
41	8179364	8093624	NM_001145856	SH3BP2	0.548947	1.334769e-9	2.312754e-5	5.640862e-7
42	8179364	8090420	NM_016372	TPRA1	0.548804	1.350648e-9	2.340267e-5	5.572065e-7
43	8179364	8080320	NM_007184	NISCH	0.545563	1.762873e-9	3.054531e-5	7.103560e-7
44	8179364	8069057	NR_024108	PFKL	0.545011	1.844064e-9	3.195210e-5	7.261841e-7
45	8179364	8032871	NM_139159	DPP9	0.543518	2.082295e-9	3.607992e-5	8.017759e-7
46	8179364	7998510	NM_001287	CLCN7	0.542764	2.213557e-9	3.835429e-5	8.337890e-7
47	8179364	8175900	NM_001666	ARHGAP4	0.541985	2.357655e-9	4.085108e-5	8.691719e-7
48	8179364	8110362	NM_001004106	GRK6	0.540777	2.598767e-9	4.502883e-5	9.381007e-7
49	8179364	8099029	NM_024309	TNIP2	0.538565	3.102932e-9	5.376451e-5	1.097235e-6
50	8179364	8026830	NM_015122	FCHO1	0.538432	3.136229e-9	5.434144e-5	1.086829e-6

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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