[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3097	7911720	NM_153818	PEX10		peroxisomal biogenesis factor 10

Fetching correlation data, please wait...
Getting list of correlations for id 3097.
Getting list of p-values for id 3097.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.117 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7911720	8086706	NM_014159	SETD2	-0.585205	5.525611e-11	9.574227e-7	9.574227e-7
2	7911720	7929609	BC024315	C10orf12	-0.572808	1.714882e-10	2.971377e-6	1.485688e-6
3	7911720	7982904	NM_015138	RTF1	-0.570285	2.147243e-10	3.720528e-6	1.240176e-6
4	7911720	8056837	NM_001033045	GPR155	-0.559938	5.292752e-10	9.170752e-6	2.292688e-6
5	7911720	8098782	NM_006651	CPLX1	0.557483	6.526571e-10	1.130859e-5	2.261718e-6
6	7911720	7950032	NM_002007	FGF4	0.550223	1.200939e-9	2.080867e-5	3.468112e-6
7	7911720	8164562	NM_199350	C9orf50	0.542822	2.203214e-9	3.817509e-5	5.453585e-6
8	7911720	7966135	NM_014325	CORO1C	-0.542272	2.303536e-9	3.991337e-5	4.989171e-6
9	7911720	8148932	NM_213605	ZNF517	0.540738	2.606876e-9	4.516935e-5	5.018816e-6
10	7911720	7967091	NM_139015	SPPL3	-0.539894	2.789747e-9	4.833794e-5	4.833794e-6
11	7911720	8093191	NM_001098424	DLG1	-0.539483	2.883316e-9	4.995921e-5	4.541746e-6
12	7911720	8003344	NM_178310	SNAI3	0.536534	3.647543e-9	6.320098e-5	5.266748e-6
13	7911720	8127484	NM_080742	B3GAT2	0.534759	4.197840e-9	7.273597e-5	5.595074e-6
14	7911720	7975344	NM_018375	SLC39A9	-0.533684	4.568667e-9	7.916129e-5	5.654378e-6
15	7911720	8101971	NM_000944	PPP3CA	-0.531984	5.219809e-9	9.044362e-5	6.029575e-6
16	7911720	8116384	NM_175062	RASGEF1C	0.531576	5.389195e-9	9.337857e-5	5.836161e-6
17	7911720	8030842	hsa-mir-99b		0.530724	5.759065e-9	9.978732e-5	5.869842e-6
18	7911720	7937433	NM_000797	DRD4	0.530178	6.009287e-9	1.041229e-4	5.784606e-6
19	7911720	8156945	NM_019592	RNF20	-0.529552	6.308394e-9	1.093055e-4	5.752924e-6
20	7911720	7996647	NM_016948	PARD6A	0.528480	6.854545e-9	1.187687e-4	5.938435e-6
21	7911720	8083429	NM_021038	MBNL1	-0.526648	7.893929e-9	1.367781e-4	6.513243e-6
22	7911720	8080926	NM_006407	ARL6IP5	-0.525046	8.925257e-9	1.546479e-4	7.029451e-6
23	7911720	8132417	NM_003718	CDK13	-0.522943	1.047626e-8	1.815222e-4	7.892271e-6
24	7911720	7991939	NM_145294	WDR90	0.521078	1.206531e-8	2.090556e-4	8.710649e-6
25	7911720	8109062	NM_205836	FBXO38	-0.520391	1.270631e-8	2.201622e-4	8.806487e-6
26	7911720	7995674	NM_024335	IRX6	0.520052	1.303423e-8	2.258441e-4	8.686313e-6
27	7911720	8049007	NM_139073	SPATA3	0.519872	1.321279e-8	2.289379e-4	8.479183e-6
28	7911720	8114814	NM_000176	NR3C1	-0.518775	1.434625e-8	2.485775e-4	8.877769e-6
29	7911720	8024995	NM_004558	NRTN	0.518278	1.488942e-8	2.579890e-4	8.896171e-6
30	7911720	8062603	NM_003286	TOP1	-0.518197	1.497985e-8	2.595559e-4	8.651863e-6
31	7911720	8153405	NR_026785	C8orf51	0.518184	1.499480e-8	2.598149e-4	8.381125e-6
32	7911720	8119918	NM_153246	C6orf223	0.518014	1.518710e-8	2.631469e-4	8.223340e-6
33	7911720	8028778	NM_002446	MAP3K10	0.517816	1.541274e-8	2.670565e-4	8.092621e-6
34	7911720	8035639	NM_023002	HAPLN4	0.517343	1.596674e-8	2.766557e-4	8.136933e-6
35	7911720	8090772	NM_007027	TOPBP1	-0.516927	1.647001e-8	2.853759e-4	8.153598e-6
36	7911720	8024808	NM_020209	SHD	0.516799	1.662664e-8	2.880898e-4	8.002495e-6
37	7911720	8133809	NM_198467	RSBN1L	-0.516182	1.740788e-8	3.016263e-4	8.152063e-6
38	7911720	7992639	NM_020705	TBC1D24	0.515953	1.770598e-8	3.067915e-4	8.073460e-6
39	7911720	7932000	NM_012311	KIN	-0.515943	1.771944e-8	3.070247e-4	7.872428e-6
40	7911720	8007505	NM_004941	DHX8	-0.515763	1.795795e-8	3.111574e-4	7.778934e-6
41	7911720	8110382	NM_030567	PRR7	0.514923	1.911072e-8	3.311314e-4	8.076375e-6
42	7911720	7984453	NM_016166	PIAS1	-0.513920	2.058046e-8	3.565976e-4	8.490418e-6
43	7911720	8059596	NM_004238	TRIP12	-0.513753	2.083607e-8	3.610266e-4	8.395968e-6
44	7911720	8128886	ENST00000363652		-0.513576	2.110875e-8	3.657513e-4	8.312530e-6
45	7911720	8078214	NM_004162	RAB5A	-0.512173	2.340214e-8	4.054888e-4	9.010863e-6
46	7911720	7934301	NM_007265	ECD	-0.510585	2.628539e-8	4.554470e-4	9.901023e-6
47	7911720	8003948	NM_001014985	GLTPD2	0.510485	2.647884e-8	4.587989e-4	9.761679e-6
48	7911720	8026900	NM_002248	KCNN1	0.510315	2.680848e-8	4.645105e-4	9.677302e-6
49	7911720	8116622	NM_003804	RIPK1	-0.509774	2.788663e-8	4.831917e-4	9.861055e-6
50	7911720	8109843	NM_004946	DOCK2	-0.509502	2.844265e-8	4.928258e-4	9.856516e-6

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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