[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7359	7946815	NM_002645	PIK3C2A		phosphoinositide-3-kinase, class 2, alpha polypeptide

Fetching correlation data, please wait...
Getting list of correlations for id 7359.
Getting list of p-values for id 7359.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.127 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7946815	8050658	NM_017552	ATAD2B	0.912325	9.819049e-42	1.701347e-37	1.701347e-37
2	7946815	7929168	NM_025235	TNKS2	0.891056	4.070866e-37	7.053589e-33	3.526795e-33
3	7946815	8095163	NM_001024924	EXOC1	0.890285	5.737201e-37	9.940848e-33	3.313616e-33
4	7946815	8086077	NM_015097	CLASP2	0.888948	1.033998e-36	1.791609e-32	4.479022e-33
5	7946815	8111360	NM_016107	ZFR	0.888746	1.129482e-36	1.957053e-32	3.914105e-33
6	7946815	7903519	NM_018061	PRPF38B	0.888003	1.560567e-36	2.703995e-32	4.506658e-33
7	7946815	7987981	NM_174916	UBR1	0.879555	5.290471e-35	9.166798e-31	1.309543e-31
8	7946815	8177560	NM_018429	BDP1	0.879505	5.397326e-35	9.351947e-31	1.168993e-31
9	7946815	7968516	NM_015032	PDS5B	0.879431	5.559146e-35	9.632332e-31	1.070259e-31
10	7946815	8106025	NM_018429	BDP1	0.878447	8.232981e-35	1.426529e-30	1.426529e-31
11	7946815	7985166	NM_004136	IREB2	0.876955	1.483796e-34	2.570974e-30	2.337249e-31
12	7946815	8174893	NM_001081550	THOC2	0.875898	2.242294e-34	3.885224e-30	3.237686e-31
13	7946815	8128472	NM_006828	ASCC3	0.875804	2.325428e-34	4.029270e-30	3.099438e-31
14	7946815	8107474	NM_005509	DMXL1	0.875585	2.532054e-34	4.387290e-30	3.133778e-31
15	7946815	8146243	NM_032410	HOOK3	0.873399	5.861571e-34	1.015634e-29	6.770896e-31
16	7946815	7989253	NM_024755	SLTM	0.873302	6.080736e-34	1.053609e-29	6.585057e-31
17	7946815	7903188	NM_021190	PTBP2	0.873249	6.205028e-34	1.075145e-29	6.324383e-31
18	7946815	8116664	NM_003913	PRPF4B	0.873149	6.445983e-34	1.116895e-29	6.204974e-31
19	7946815	8134122	NM_005751	AKAP9	0.872777	7.421818e-34	1.285978e-29	6.768307e-31
20	7946815	8152553	NM_003184	TAF2	0.872706	7.624075e-34	1.321023e-29	6.605117e-31
21	7946815	8140878	NM_194455	KRIT1	0.872527	8.157682e-34	1.413482e-29	6.730865e-31
22	7946815	8078110	NM_014296	CAPN7	0.872117	9.518121e-34	1.649205e-29	7.496385e-31
23	7946815	8130038	NM_001042683	SHPRH	0.871609	1.152082e-33	1.996213e-29	8.679188e-31
24	7946815	8173673	NM_000489	ATRX	0.871450	1.222781e-33	2.118712e-29	8.827966e-31
25	7946815	8052526	NM_003400	XPO1	0.871354	1.267461e-33	2.196129e-29	8.784517e-31
26	7946815	7969935	NM_000123	ERCC5	0.870967	1.464300e-33	2.537192e-29	9.758430e-31
27	7946815	8100251	NM_015030	FRYL	0.870945	1.476539e-33	2.558398e-29	9.475550e-31
28	7946815	8100615	NM_018227	UBA6	0.869597	2.433337e-33	4.216243e-29	1.505801e-30
29	7946815	8144812	NM_006197	PCM1	0.869093	2.928294e-33	5.073855e-29	1.749605e-30
30	7946815	8041592	NM_019063	EML4	0.868376	3.807249e-33	6.596821e-29	2.198940e-30
31	7946815	8046759	NM_018981	DNAJC10	0.868107	4.199432e-33	7.276355e-29	2.347211e-30
32	7946815	7973770	NM_016106	SCFD1	0.867763	4.759155e-33	8.246189e-29	2.576934e-30
33	7946815	8085852	NM_018297	NGLY1	0.866865	6.583890e-33	1.140791e-28	3.456941e-30
34	7946815	8070341	NM_033656	BRWD1	0.866635	7.153694e-33	1.239521e-28	3.645649e-30
35	7946815	8113083	NM_032042	FAM172A	0.866572	7.316540e-33	1.267737e-28	3.622105e-30
36	7946815	8087951	NM_018165	PBRM1	0.866104	8.653811e-33	1.499446e-28	4.165127e-30
37	7946815	8021015	NM_002647	PIK3C3	0.865170	1.207807e-32	2.092767e-28	5.656127e-30
38	7946815	8090898	NM_005862	STAG1	0.865008	1.279119e-32	2.216329e-28	5.832445e-30
39	7946815	7969114	NM_031915	SETDB2	0.864782	1.385971e-32	2.401472e-28	6.157620e-30
40	7946815	7980940	NM_004993	ATXN3	0.864534	1.513328e-32	2.622143e-28	6.555357e-30
41	7946815	7984641	NM_005744	ARIH1	0.864204	1.700677e-32	2.946762e-28	7.187225e-30
42	7946815	8154531	NM_017925	DENND4C	0.863980	1.839846e-32	3.187901e-28	7.590241e-30
43	7946815	8134180	NM_019004	ANKIB1	0.863943	1.864529e-32	3.230669e-28	7.513184e-30
44	7946815	8082911	NM_006153	NCK1	0.863775	1.978003e-32	3.427287e-28	7.789288e-30
45	7946815	7989128	NM_144571	CNOT6L	0.863759	1.988877e-32	3.446128e-28	7.658062e-30
46	7946815	8155770	NM_015110	SMC5	0.863281	2.351958e-32	4.075237e-28	8.859212e-30
47	7946815	7967900	NM_003453	ZMYM2	0.862666	2.915975e-32	5.052509e-28	1.075002e-29
48	7946815	8082688	NM_015268	DNAJC13	0.862659	2.922519e-32	5.063849e-28	1.054969e-29
49	7946815	7907790	NM_014810	CEP350	0.862352	3.252805e-32	5.636134e-28	1.150232e-29
50	7946815	7962499	NM_004719	SRSF2IP	0.860556	6.045474e-32	1.047499e-27	2.094999e-29

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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