[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6745	7920744	NM_000298	PKLR		pyruvate kinase, liver and RBC

Fetching correlation data, please wait...
Getting list of correlations for id 6745.
Getting list of p-values for id 6745.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.141 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7920744	7937560	NM_002457	MUC2	0.846803	5.323321e-30	9.223719e-26	9.223719e-26
2	7920744	7952893	BC024764	IQSEC3	0.845129	8.908066e-30	1.543501e-25	7.717503e-26
3	7920744	7970241	NM_000504	F10	0.842610	1.911313e-29	3.311732e-25	1.103911e-25
4	7920744	7913450	NM_005529	HSPG2	0.839477	4.848607e-29	8.401182e-25	2.100295e-25
5	7920744	8114550	NM_004883	NRG2	0.836627	1.111716e-28	1.926271e-24	3.852542e-25
6	7920744	8033462	NM_206833	CTXN1	0.830672	5.986680e-28	1.037312e-23	1.728853e-24
7	7920744	8151609	NM_172239	REXO1L1	0.830449	6.367418e-28	1.103283e-23	1.576118e-24
8	7920744	7935983	NM_005029	PITX3	0.828798	1.003129e-27	1.738122e-23	2.172652e-24
9	7920744	8155942	NM_001013735	FOXB2	0.828272	1.158260e-27	2.006917e-23	2.229908e-24
10	7920744	7903632	NM_001408	CELSR2	0.824750	2.995987e-27	5.191147e-23	5.191147e-24
11	7920744	8073941	ENST00000411210		0.821778	6.573274e-27	1.138951e-22	1.035410e-23
12	7920744	7945550	NM_018494	LRDD	0.821284	7.479951e-27	1.296051e-22	1.080043e-23
13	7920744	8023984	NM_001194	HCN2	0.819672	1.136969e-26	1.970027e-22	1.515405e-23
14	7920744	8030015	NM_012451	SYNGR4	0.819532	1.178824e-26	2.042548e-22	1.458963e-23
15	7920744	7998444	ENST00000440800		0.819522	1.181791e-26	2.047689e-22	1.365126e-23
16	7920744	8115691	NM_003062	SLIT3	0.817835	1.822931e-26	3.158593e-22	1.974121e-23
17	7920744	7991939	NM_145294	WDR90	0.817798	1.840184e-26	3.188486e-22	1.875580e-23
18	7920744	8008409	NM_018896	CACNA1G	0.817673	1.899846e-26	3.291863e-22	1.828813e-23
19	7920744	8116033	NM_000505	F12	0.815806	3.052254e-26	5.288640e-22	2.783495e-23
20	7920744	8153828	NM_003923	FOXH1	0.814922	3.812944e-26	6.606689e-22	3.303344e-23
21	7920744	8121209	NM_005604	POU3F2	0.814884	3.848839e-26	6.668883e-22	3.175659e-23
22	7920744	8064242	NR_027686	NCRNA00176	0.814393	4.353406e-26	7.543146e-22	3.428703e-23
23	7920744	8159036	NM_139025	ADAMTS13	0.813627	5.270880e-26	9.132854e-22	3.970806e-23
24	7920744	8038299	NM_033142	CGB7	0.813191	5.875141e-26	1.017986e-21	4.241607e-23
25	7920744	8079021	NM_001904	CTNNB1	-0.812672	6.682293e-26	1.157841e-21	4.631363e-23
26	7920744	8060604	NM_000915	OXT	0.812642	6.732074e-26	1.166466e-21	4.486409e-23
27	7920744	7963880	NM_001144996	ITGA7	0.812234	7.446801e-26	1.290307e-21	4.778916e-23
28	7920744	8087116	NM_001008269	TMEM89	0.811550	8.814931e-26	1.527363e-21	5.454868e-23
29	7920744	7992845	NM_003456	ZNF205	0.809516	1.449763e-25	2.512005e-21	8.662086e-23
30	7920744	8064059	NM_020882	COL20A1	0.809371	1.501503e-25	2.601655e-21	8.672182e-23
31	7920744	8026390	NM_173482	CCDC105	0.809248	1.547102e-25	2.680664e-21	8.647303e-23
32	7920744	8162283	NM_004560	ROR2	0.809207	1.562500e-25	2.707344e-21	8.460451e-23
33	7920744	8028719	NM_016941	DLL3	0.808701	1.766462e-25	3.060748e-21	9.274994e-23
34	7920744	8005328	NM_016239	MYO15A	0.808516	1.847188e-25	3.200623e-21	9.413597e-23
35	7920744	8111216	ENST00000426411		0.808394	1.902608e-25	3.296649e-21	9.418998e-23
36	7920744	8014269	NM_139285	GAS2L2	0.806997	2.662403e-25	4.613146e-21	1.281429e-22
37	7920744	7955184	NM_006262	PRPH	0.806676	2.874679e-25	4.980956e-21	1.346204e-22
38	7920744	8004842	NM_173728	ARHGEF15	0.806343	3.113194e-25	5.394232e-21	1.419535e-22
39	7920744	7997569	NM_139174	ADAD2	0.805878	3.477609e-25	6.025654e-21	1.545039e-22
40	7920744	7992758	NM_172229	KREMEN2	0.805601	3.714738e-25	6.436526e-21	1.609132e-22
41	7920744	8018379	NM_020753	CASKIN2	0.803629	5.919105e-25	1.025603e-20	2.501471e-22
42	7920744	8110382	NM_030567	PRR7	0.803609	5.946571e-25	1.030362e-20	2.453244e-22
43	7920744	7929840	NM_003987	PAX2	0.803519	6.074072e-25	1.052454e-20	2.447568e-22
44	7920744	8049942	NM_080741	NEU4	0.802587	7.554784e-25	1.309017e-20	2.975040e-22
45	7920744	8125805	NM_000841	GRM4	0.802371	7.945143e-25	1.376655e-20	3.059233e-22
46	7920744	7917156	NM_003902	FUBP1	-0.801601	9.505375e-25	1.646996e-20	3.580427e-22
47	7920744	7992460	NM_001099456	NPW	0.801451	9.842550e-25	1.705419e-20	3.628550e-22
48	7920744	8060134	NM_004321	KIF1A	0.801240	1.033541e-24	1.790816e-20	3.730866e-22
49	7920744	8173629	NM_004299	ABCB7	-0.801171	1.050082e-24	1.819477e-20	3.713219e-22
50	7920744	8159670	NM_006647	NOXA1	0.801108	1.065465e-24	1.846132e-20	3.692264e-22

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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