[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1106	8073826	NM_005036	PPARA		peroxisome proliferator-activated receptor alpha

Fetching correlation data, please wait...
Getting list of correlations for id 1106.
Getting list of p-values for id 1106.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.098 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8073826	8068952	NM_020132	AGPAT3	0.394680	3.095888e-5	5.364245e-1	5.364245e-1
2	8073826	8009693	NM_017728	TMEM104	0.388524	4.210010e-5	7.294685e-1	3.647343e-1
3	8073826	7947652	NM_017749	AMBRA1	0.384380	5.160316e-5	8.941279e-1	2.980426e-1
4	8073826	8044462	NM_153712	TTL	0.381469	5.943980e-5	1.029913e+0	2.574784e-1
5	8073826	8063394	NM_002827	PTPN1	0.371000	9.775143e-5	1.693739e+0	3.387478e-1
6	8073826	7959777	NM_080626	BRI3BP	0.368939	1.075928e-4	1.864260e+0	3.107100e-1
7	8073826	8049246	NM_001017915	INPP5D	0.366600	1.198800e-4	2.077160e+0	2.967371e-1
8	8073826	8037695	NM_004819	SYMPK	0.355430	1.986470e-4	3.441956e+0	4.302445e-1
9	8073826	7996345	NM_003869	CES2	0.354502	2.069861e-4	3.586448e+0	3.984942e-1
10	8073826	7977584	NM_001100814	TMEM55B	0.354397	2.079522e-4	3.603188e+0	3.603188e-1
11	8073826	7900030	NM_012199	EIF2C1	0.350799	2.435931e-4	4.220738e+0	3.837034e-1
12	8073826	8006984	NM_002809	PSMD3	0.349486	2.579585e-4	4.469646e+0	3.724705e-1
13	8073826	7915363	NM_001031694	SCMH1	0.349471	2.581260e-4	4.472550e+0	3.440423e-1
14	8073826	8119132	NM_173558	FGD2	0.348383	2.706117e-4	4.688888e+0	3.349206e-1
15	8073826	8036045	NM_175872	ZNF792	0.345725	3.035274e-4	5.259220e+0	3.506147e-1
16	8073826	7937900	NM_003156	STIM1	0.345044	3.125233e-4	5.415090e+0	3.384432e-1
17	8073826	8017361	GENSCAN00000022423		-0.344907	3.143733e-4	5.447147e+0	3.204204e-1
18	8073826	8165183	NM_014866	SEC16A	0.344183	3.242729e-4	5.618677e+0	3.121487e-1
19	8073826	hsa-miR-889	MI0005540		-0.343683	3.312694e-4	5.739905e+0	3.021003e-1
20	8073826	7996675	NM_020457	THAP11	0.341649	3.612122e-4	6.258723e+0	3.129362e-1
21	8073826	8165610	NM_138778	WDR85	0.341132	3.692119e-4	6.397335e+0	3.046350e-1
22	8073826	7977511	NM_007110	TEP1	0.341017	3.710157e-4	6.428589e+0	2.922086e-1
23	8073826	8066461	NM_006809	TOMM34	0.340767	3.749593e-4	6.496920e+0	2.824748e-1
24	8073826	7960544	NM_199245	VAMP1	0.339705	3.921522e-4	6.794821e+0	2.831175e-1
25	8073826	7982876	ENST00000287660		-0.335190	4.736374e-4	8.206715e+0	3.282686e-1
26	8073826	8077123	NR_027928	CHKB-CPT1B	0.334737	4.826106e-4	8.362195e+0	3.216229e-1
27	8073826	8013179	NM_145691	ATPAF2	0.332485	5.296240e-4	9.176795e+0	3.398813e-1
28	8073826	8073379	NM_031488	L3MBTL2	0.330203	5.815294e-4	1.007616e+1	3.598628e-1
29	8073826	8095214	ENST00000363871		0.328648	6.195150e-4	1.073434e+1	3.701495e-1
30	8073826	7923394	NM_138795	ARL8A	0.328225	6.302349e-4	1.092008e+1	3.640027e-1
31	8073826	8023323	NM_015846	MBD1	0.328103	6.333648e-4	1.097431e+1	3.540101e-1
32	8073826	8076481	NM_000398	CYB5R3	0.327246	6.556951e-4	1.136123e+1	3.550384e-1
33	8073826	8005785	NM_014238	KSR1	0.326254	6.824767e-4	1.182527e+1	3.583416e-1
34	8073826	7962895	NM_016594	FKBP11	0.325975	6.901754e-4	1.195867e+1	3.517256e-1
35	8073826	8007058	NM_133264	WIPF2	0.324435	7.341607e-4	1.272080e+1	3.634515e-1
36	8073826	8003410	NM_000512	GALNS	0.323302	7.681653e-4	1.331000e+1	3.697222e-1
37	8073826	8025659	NM_032885	ATG4D	0.323162	7.724460e-4	1.338417e+1	3.617344e-1
38	8073826	7970810	NM_003045	SLC7A1	0.322614	7.894771e-4	1.367927e+1	3.599808e-1
39	8073826	8031223	NM_006669	LILRB1	0.321727	8.177785e-4	1.416965e+1	3.633243e-1
40	8073826	8071357	AB051440	LOC440792	-0.320924	8.442017e-4	1.462748e+1	3.656871e-1
41	8073826	8168779	ENST00000332270		-0.320737	8.504865e-4	1.473638e+1	3.594239e-1
42	8073826	8005313	NM_001388	DRG2	0.320641	8.537121e-4	1.479227e+1	3.521969e-1
43	8073826	7942562	NM_006656	NEU3	0.319727	8.850409e-4	1.533510e+1	3.566303e-1
44	8073826	7940079	NM_001085458	CTNND1	0.319580	8.901812e-4	1.542417e+1	3.505493e-1
45	8073826	7899192	NM_002953	RPS6KA1	0.318997	9.108267e-4	1.578189e+1	3.507087e-1
46	8073826	8016725	NM_052855	ANKRD40	0.318307	9.358285e-4	1.621510e+1	3.525022e-1
47	8073826	7979862	ENST00000384041		0.317027	9.838448e-4	1.704708e+1	3.627038e-1
48	8073826	8007757	NM_005892	FMNL1	0.316845	9.908480e-4	1.716842e+1	3.576755e-1
49	8073826	8079037	NM_001042646	TRAK1	0.315728	1.034890e-3	1.793153e+1	3.659497e-1
50	8073826	8141659			-0.314744	1.075167e-3	1.862942e+1	3.725885e-1

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation