[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
562	8165610	NM_138778	WDR85		WD repeat domain 85

Fetching correlation data, please wait...
Getting list of correlations for id 562.
Getting list of p-values for id 562.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.087 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8165610	8010512	NM_020761	RPTOR	0.536936	3.532996e-9	6.121622e-5	6.121622e-5
2	8165610	8179926	NM_005510	DOM3Z	0.495892	7.490648e-8	1.297905e-3	6.489523e-4
3	8165610	8037695	NM_004819	SYMPK	0.494529	8.234715e-8	1.426829e-3	4.756097e-4
4	8165610	8125788	NM_181336	LEMD2	0.491906	9.869050e-8	1.710010e-3	4.275026e-4
5	8165610	7970810	NM_003045	SLC7A1	0.489860	1.135354e-7	1.967228e-3	3.934455e-4
6	8165610	7940824	NM_024771	NAA40	0.489744	1.144402e-7	1.982906e-3	3.304843e-4
7	8165610	8134777	NM_024070	PVRIG	0.475531	2.954847e-7	5.119864e-3	7.314091e-4
8	8165610	8098880	NM_001012614	CTBP1	0.474684	3.122456e-7	5.410279e-3	6.762848e-4
9	8165610	8071691	NM_004327	BCR	0.468255	4.724146e-7	8.185528e-3	9.095032e-4
10	8165610	8077042	NM_002972	SBF1	0.467928	4.823510e-7	8.357696e-3	8.357696e-4
11	8165610	8018937	NM_025090	USP36	0.457022	9.546315e-7	1.654090e-2	1.503718e-3
12	8165610	8026170	NM_030818	CCDC130	0.456980	9.570913e-7	1.658352e-2	1.381960e-3
13	8165610	7924669	NM_013328	PYCR2	0.455213	1.066679e-6	1.848235e-2	1.421720e-3
14	8165610	8003357	NM_001142864	FAM38A	0.451535	1.334036e-6	2.311485e-2	1.651061e-3
15	8165610	8033162	NM_003685	KHSRP	0.447689	1.680902e-6	2.912498e-2	1.941665e-3
16	8165610	8045301	NM_017751	SMPD4	0.443011	2.218093e-6	3.843289e-2	2.402056e-3
17	8165610	7960280	NM_152441	FBXL14	0.439648	2.700551e-6	4.679245e-2	2.752497e-3
18	8165610	8139299	NM_001127218	POLD2	0.434876	3.558006e-6	6.164958e-2	3.424976e-3
19	8165610	8118696	NM_006772	SYNGAP1	0.434776	3.578584e-6	6.200613e-2	3.263480e-3
20	8165610	8007008	NM_003250	THRA	0.433529	3.843023e-6	6.658807e-2	3.329403e-3
21	8165610	7945377	NM_001135053	SIGIRR	0.432658	4.038764e-6	6.997967e-2	3.332365e-3
22	8165610	8136954	NM_001130025	FAM115C	0.425445	6.061782e-6	1.050325e-1	4.774204e-3
23	8165610	8068810	NM_018964	SLC37A1	0.424905	6.246474e-6	1.082327e-1	4.705768e-3
24	8165610	8136940	NM_001130025	FAM115C	0.424521	6.380911e-6	1.105620e-1	4.606752e-3
25	8165610	7967493	NM_006312	NCOR2	0.423739	6.663455e-6	1.154577e-1	4.618307e-3
26	8165610	8053158	NM_006302	MOGS	0.423491	6.755606e-6	1.170544e-1	4.502092e-3
27	8165610	8080001	NM_016173	HEMK1	0.422655	7.075011e-6	1.225887e-1	4.540323e-3
28	8165610	8073397	NM_017590	ZC3H7B	0.419496	8.414064e-6	1.457905e-1	5.206803e-3
29	8165610	7946569	NM_016422	RNF141	-0.418914	8.685468e-6	1.504931e-1	5.189418e-3
30	8165610	7997626	NM_024731	KLHL36	0.417142	9.563678e-6	1.657099e-1	5.523662e-3
31	8165610	8000543	NM_000086	CLN3	0.416670	9.811257e-6	1.699997e-1	5.483860e-3
32	8165610	8035050	NM_022904	RASAL3	0.416381	9.965713e-6	1.726759e-1	5.396122e-3
33	8165610	8015526	NM_021078	KAT2A	0.414432	1.106959e-5	1.918028e-1	5.812206e-3
34	8165610	7963577	NM_032840	SPRYD3	0.409083	1.471940e-5	2.550431e-1	7.501266e-3
35	8165610	8073379	NM_031488	L3MBTL2	0.408245	1.538465e-5	2.665699e-1	7.616283e-3
36	8165610	8009693	NM_017728	TMEM104	0.408186	1.543252e-5	2.673993e-1	7.427760e-3
37	8165610	8137202	NM_001099220	ZNF862	0.406141	1.718136e-5	2.977014e-1	8.045983e-3
38	8165610	8168779	ENST00000332270		-0.405749	1.753749e-5	3.038721e-1	7.996634e-3
39	8165610	7905754	NM_020452	ATP8B2	0.405444	1.781915e-5	3.087525e-1	7.916730e-3
40	8165610	8032608	NM_174983	C19orf28	0.404900	1.833243e-5	3.176460e-1	7.941149e-3
41	8165610	8074730	NM_004327	BCR	0.404279	1.893487e-5	3.280844e-1	8.002059e-3
42	8165610	8148715	NM_003801	GPAA1	0.403964	1.924689e-5	3.334908e-1	7.940257e-3
43	8165610	8034983	NM_058243	BRD4	0.403478	1.973900e-5	3.420176e-1	7.953898e-3
44	8165610	8010212	NM_152468	TMC8	0.403336	1.988468e-5	3.445418e-1	7.830496e-3
45	8165610	8055183	NM_017751	SMPD4	0.403297	1.992561e-5	3.452511e-1	7.672247e-3
46	8165610	8170921	NM_017514	PLXNA3	0.402975	2.025998e-5	3.510447e-1	7.631408e-3
47	8165610	8025659	NM_032885	ATG4D	0.402511	2.075329e-5	3.595923e-1	7.650900e-3
48	8165610	8006984	NM_002809	PSMD3	0.402338	2.093921e-5	3.628137e-1	7.558619e-3
49	8165610	7966570	NM_001111322	DDX54	0.401540	2.182004e-5	3.780759e-1	7.715835e-3
50	8165610	7963631	NM_000966	RARG	0.400314	2.324061e-5	4.026901e-1	8.053802e-3

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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