[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6067	8007008	NM_003250	THRA		thyroid hormone receptor, alpha (erythroblastic leukemia viral (v-erb-a) oncogene homolog, avian)

Fetching correlation data, please wait...
Getting list of correlations for id 6067.
Getting list of p-values for id 6067.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.442 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8007008	8006788	NM_005937	MLLT6	0.636576	2.909091e-13	5.040582e-9	5.040582e-9
2	8007008	7968890	NM_003646	DGKZ	0.602184	1.081610e-11	1.874106e-7	9.370531e-8
3	8007008	8175900	NM_001666	ARHGAP4	0.600739	1.247366e-11	2.161311e-7	7.204371e-8
4	8007008	8073522	NM_004599	SREBF2	0.597941	1.640417e-11	2.842350e-7	7.105876e-8
5	8007008	8076137	NM_015374	SUN2	0.584787	5.745281e-11	9.954848e-7	1.990970e-7
6	8007008	8036525	NM_001042600	MAP4K1	0.568288	2.561750e-10	4.438744e-6	7.397907e-7
7	8007008	7941879	NM_198517	TBC1D10C	0.565001	3.417038e-10	5.920702e-6	8.458146e-7
8	8007008	8036613	NM_001533	HNRNPL	0.557803	6.351431e-10	1.100512e-5	1.375640e-6
9	8007008	8031536	NM_007279	U2AF2	0.554587	8.338771e-10	1.444859e-5	1.605399e-6
10	8007008	8010161	NM_006640	SEPT9	0.553497	9.138649e-10	1.583454e-5	1.583454e-6
11	8007008	8065612	NM_080616	C20orf112	0.546620	1.616631e-9	2.801136e-5	2.546488e-6
12	8007008	8131143	NM_001040167	LFNG	0.539947	2.777903e-9	4.813272e-5	4.011060e-6
13	8007008	8011516	NM_174954	ATP2A3	0.533394	4.673777e-9	8.098253e-5	6.229426e-6
14	8007008	8070811	NM_006936	SUMO3	0.525109	8.882169e-9	1.539013e-4	1.099295e-5
15	8007008	8141526	NM_030935	TSC22D4	0.521873	1.136152e-8	1.968610e-4	1.312407e-5
16	8007008	8049317	NM_152879	DGKD	0.521778	1.144371e-8	1.982852e-4	1.239283e-5
17	8007008	8140297	NM_001099415	POM121C	0.518960	1.414900e-8	2.451596e-4	1.442116e-5
18	8007008	8034482	NM_001136196	TNPO2	0.517842	1.538325e-8	2.665456e-4	1.480809e-5
19	8007008	8163569	NM_030767	AKNA	0.517312	1.600395e-8	2.773004e-4	1.459476e-5
20	8007008	8029147	NM_199002	ARHGEF1	0.517087	1.627448e-8	2.819880e-4	1.409940e-5
21	8007008	8158725	NM_005157	ABL1	0.516718	1.672762e-8	2.898395e-4	1.380188e-5
22	8007008	7967202	NM_019034	RHOF	0.514284	2.003533e-8	3.471522e-4	1.577964e-5
23	8007008	8010212	NM_152468	TMC8	0.510202	2.702958e-8	4.683415e-4	2.036268e-5
24	8007008	8076176	NM_014292	CBX6	0.509831	2.776948e-8	4.811617e-4	2.004841e-5
25	8007008	8119627	NM_006245	PPP2R5D	0.509638	2.816269e-8	4.879750e-4	1.951900e-5
26	8007008	8098880	NM_001012614	CTBP1	0.509502	2.844280e-8	4.928285e-4	1.895494e-5
27	8007008	8077595	NM_001003694	BRPF1	0.509152	2.917641e-8	5.055396e-4	1.872369e-5
28	8007008	8118932	NM_022047	DEF6	0.508453	3.069343e-8	5.318251e-4	1.899375e-5
29	8007008	7938100	NM_000543	SMPD1	0.506929	3.426768e-8	5.937562e-4	2.047435e-5
30	8007008	7986541	NR_003659	WASH3P	0.506474	3.541084e-8	6.135636e-4	2.045212e-5
31	8007008	8044649	NR_024077	WASH2P	0.506034	3.654856e-8	6.332769e-4	2.042829e-5
32	8007008	8085431	NM_024923	NUP210	0.504780	3.999170e-8	6.929361e-4	2.165425e-5
33	8007008	8076185	NM_175709	CBX7	0.502464	4.717900e-8	8.174706e-4	2.477184e-5
34	8007008	8025788	NM_001128849	SMARCA4	0.501494	5.054050e-8	8.757153e-4	2.575633e-5
35	8007008	7897648	NM_004565	PEX14	0.500610	5.380492e-8	9.322779e-4	2.663651e-5
36	8007008	8071823	NM_012295	CABIN1	0.500511	5.418007e-8	9.387781e-4	2.607717e-5
37	8007008	8141425	NM_005641	TAF6	0.500105	5.575550e-8	9.660756e-4	2.611015e-5
38	8007008	8032392	NM_199054	MKNK2	0.499805	5.694932e-8	9.867608e-4	2.596739e-5
39	8007008	8133275	NM_172020	POM121	0.499276	5.911089e-8	1.024214e-3	2.626191e-5
40	8007008	8049689	NM_018226	RNPEPL1	0.497114	6.878617e-8	1.191858e-3	2.979645e-5
41	8007008	8141180	NM_015395	TECPR1	0.497050	6.909748e-8	1.197252e-3	2.920127e-5
42	8007008	7941311	NM_153253	SIPA1	0.496848	7.007633e-8	1.214213e-3	2.890982e-5
43	8007008	7994889	NM_006662	SRCAP	0.496239	7.312052e-8	1.266959e-3	2.946417e-5
44	8007008	8032755	NM_015898	ZBTB7A	0.494351	8.336750e-8	1.444509e-3	3.282974e-5
45	8007008	8075493	NM_014323	PATZ1	0.493325	8.949903e-8	1.550750e-3	3.446110e-5
46	8007008	7935968	NM_003893	LDB1	0.493196	9.029715e-8	1.564579e-3	3.401258e-5
47	8007008	7952145	NM_006389	HYOU1	0.493177	9.041375e-8	1.566599e-3	3.333190e-5
48	8007008	8026315	NM_213560	PKN1	0.492738	9.319523e-8	1.614794e-3	3.364154e-5
49	8007008	8025895	NM_002743	PRKCSH	0.490540	1.083781e-7	1.877867e-3	3.832381e-5
50	8007008	8054077	NM_005735	ACTR1B	0.490524	1.084974e-7	1.879935e-3	3.759870e-5

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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