[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2655	8061138	NM_020536	CSRP2BP		CSRP2 binding protein

Fetching correlation data, please wait...
Getting list of correlations for id 2655.
Getting list of p-values for id 2655.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.125 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8061138	7971184	NM_005830	MRPS31	0.651197	5.430473e-14	9.409381e-10	9.409381e-10
2	8061138	8088830	NM_018130	SHQ1	0.617813	2.208841e-12	3.827258e-8	1.913629e-8
3	8061138	8025132	NM_024341	ZNF557	0.616028	2.660121e-12	4.609192e-8	1.536397e-8
4	8061138	7979916	NM_018373	SYNJ2BP	0.607795	6.176021e-12	1.070119e-7	2.675298e-8
5	8061138	7971858	ENST00000334406		0.606723	6.879957e-12	1.192090e-7	2.384180e-8
6	8061138	7960131	ENST00000425052		0.606682	6.908020e-12	1.196953e-7	1.994921e-8
7	8061138	8030351	NM_012423	RPL13A	0.595267	2.126192e-11	3.684053e-7	5.262933e-8
8	8061138	7968898	BC039586	KIAA1704	0.591294	3.112415e-11	5.392882e-7	6.741103e-8
9	8061138	8038086	NM_000979	RPL18	0.590939	3.219403e-11	5.578259e-7	6.198066e-8
10	8061138	8011245	NM_018128	TSR1	0.589576	3.663990e-11	6.348596e-7	6.348596e-8
11	8061138	7954591	NM_021821	MRPS35	0.588154	4.190651e-11	7.261140e-7	6.601037e-8
12	8061138	8020323	NM_003799	RNMT	0.588068	4.225005e-11	7.320667e-7	6.100556e-8
13	8061138	8027241	NM_021047	ZNF253	0.587649	4.394938e-11	7.615109e-7	5.857776e-8
14	8061138	8129095	ENST00000435100		0.587517	4.449554e-11	7.709743e-7	5.506959e-8
15	8061138	7950683	NM_024678	NARS2	0.587345	4.522350e-11	7.835877e-7	5.223918e-8
16	8061138	8160016	NM_012416	RANBP6	0.586128	5.068748e-11	8.782619e-7	5.489137e-8
17	8061138	7947138	NM_022725	FANCF	0.585459	5.396028e-11	9.349697e-7	5.499822e-8
18	8061138	8029958	NM_015710	GLTSCR2	0.584267	6.029882e-11	1.044798e-6	5.804432e-8
19	8061138	8056966	ENST00000405359		0.581211	8.000409e-11	1.386231e-6	7.295952e-8
20	8061138	8154388	ENST00000435137		0.579707	9.184958e-11	1.591478e-6	7.957388e-8
21	8061138	8009561	NM_000999	RPL38	0.577833	1.089814e-10	1.888320e-6	8.992002e-8
22	8061138	7973840	NM_001030055	ARHGAP5	0.572436	1.772990e-10	3.072061e-6	1.396391e-7
23	8061138	8118974	NM_007104	RPL10A	0.572287	1.796661e-10	3.113075e-6	1.353511e-7
24	8061138	8030368	NM_001015	RPS11	0.566643	2.960139e-10	5.129032e-6	2.137097e-7
25	8061138	7898582	BC072682	RPS14P3	0.566616	2.967330e-10	5.141492e-6	2.056597e-7
26	8061138	7981919	NM_022807	SNRPN	0.564752	3.491858e-10	6.050342e-6	2.327055e-7
27	8061138	8116520	NM_006098	GNB2L1	0.564263	3.643799e-10	6.313610e-6	2.338374e-7
28	8061138	8131292	NM_021163	RBAK	0.562753	4.153532e-10	7.196825e-6	2.570295e-7
29	8061138	8114396	NM_004661	CDC23	0.562308	4.316478e-10	7.479162e-6	2.579021e-7
30	8061138	7956743	NM_001034996	RPL14	0.561957	4.449080e-10	7.708922e-6	2.569641e-7
31	8061138	8172358	NM_153477	UXT	0.561911	4.466941e-10	7.739869e-6	2.496732e-7
32	8061138	8109821	NM_006013	RPL10	0.559265	5.606892e-10	9.715063e-6	3.035957e-7
33	8061138	8146334	ENST00000343867		0.558625	5.921720e-10	1.026056e-5	3.109262e-7
34	8061138	7979565	NM_080666	WDR89	0.558167	6.157685e-10	1.066942e-5	3.138065e-7
35	8061138	8075430	NM_014941	MORC2	0.557927	6.284683e-10	1.088947e-5	3.111277e-7
36	8061138	8005471	NM_001031	RPS28	0.557845	6.328962e-10	1.096619e-5	3.046164e-7
37	8061138	8154359	AY779046	RPL18A	0.557187	6.692729e-10	1.159649e-5	3.134187e-7
38	8061138	8145782	NM_032509	MAK16	0.556054	7.367238e-10	1.276521e-5	3.359266e-7
39	8061138	8112337	NM_173829	SFRS12IP1	0.554754	8.222312e-10	1.424680e-5	3.653026e-7
40	8061138	7901038	NM_001012	RPS8	0.554473	8.419258e-10	1.458805e-5	3.647012e-7
41	8061138	8152465	NM_003756	EIF3H	0.554430	8.449379e-10	1.464024e-5	3.570790e-7
42	8061138	8099051	NM_003703	NOP14	0.554017	8.748105e-10	1.515784e-5	3.609010e-7
43	8061138	8128322	NM_014165	NDUFAF4	0.553133	9.421595e-10	1.632480e-5	3.796465e-7
44	8061138	8146225	NM_001135674	C8orf40	0.551575	1.073219e-9	1.859566e-5	4.226287e-7
45	8061138	8082066	NM_014367	FAM162A	0.551274	1.100443e-9	1.906737e-5	4.237194e-7
46	8061138	7923007	NM_015984	UCHL5	0.550449	1.178588e-9	2.042139e-5	4.439433e-7
47	8061138	8110450	NM_031266	HNRNPAB	0.550329	1.190462e-9	2.062713e-5	4.388752e-7
48	8061138	8052562	NM_006430	CCT4	0.550302	1.193071e-9	2.067233e-5	4.306736e-7
49	8061138	8095221	NM_001079525	PAICS	0.550099	1.213333e-9	2.102342e-5	4.290493e-7
50	8061138	8162880	NM_019051	MRPL50	0.549998	1.223581e-9	2.120098e-5	4.240196e-7

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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