[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
17179	8025395	NM_001031	RPS28		ribosomal protein S28
17180	7942824	NM_001031	RPS28		ribosomal protein S28
17184	8005471	NM_001031	RPS28		ribosomal protein S28

Fetching correlation data, please wait...
Getting list of correlations for id 17179.
Getting list of p-values for id 17179.
1 of 3 done.
Getting list of correlations for id 17180.
Getting list of p-values for id 17180.
2 of 3 done.
Getting list of correlations for id 17184.
Getting list of p-values for id 17184.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.239 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8025395	7942824	NM_001031	RPS28	0.999543	2.374119e-158	1.234091e-153	1.234091e-153
2	7942824	8025395	NM_001031	RPS28	0.999543	2.374119e-158	1.234091e-153	6.170455e-154
3	8005471	8025395	NM_001031	RPS28	0.996582	2.246619e-113	1.167815e-108	3.892716e-109
4	8025395	8005471	NM_001031	RPS28	0.996582	2.246619e-113	1.167815e-108	2.919537e-109
5	7942824	8005471	NM_001031	RPS28	0.995848	4.941805e-109	2.568800e-104	5.137599e-105
6	8005471	7942824	NM_001031	RPS28	0.995848	4.941805e-109	2.568800e-104	4.281333e-105
7	8005471	8038086	NM_000979	RPL18	0.885739	4.121746e-36	2.142525e-31	3.060750e-32
8	8005471	8116520	NM_006098	GNB2L1	0.881596	2.314565e-35	1.203134e-30	1.503918e-31
9	8025395	8038086	NM_000979	RPL18	0.877318	1.286950e-34	6.689695e-30	7.432994e-31
10	8025395	8116520	NM_006098	GNB2L1	0.875066	3.094226e-34	1.608410e-29	1.608410e-30
11	7942824	8038086	NM_000979	RPL18	0.874294	4.163389e-34	2.164171e-29	1.967428e-30
12	7942824	8116520	NM_006098	GNB2L1	0.873292	6.104714e-34	3.173291e-29	2.644410e-30
13	8005471	7956743	NM_001034996	RPL14	0.852074	1.009729e-30	5.248672e-26	4.037440e-27
14	8005471	8109821	NM_006013	RPL10	0.847134	4.803618e-30	2.496969e-25	1.783549e-26
15	8025395	7956743	NM_001034996	RPL14	0.842208	2.156136e-29	1.120781e-24	7.471874e-26
16	8025395	8109821	NM_006013	RPL10	0.841388	2.754996e-29	1.432074e-24	8.950465e-26
17	7942824	8109821	NM_006013	RPL10	0.840032	4.118398e-29	2.140785e-24	1.259285e-25
18	7942824	7956743	NM_001034996	RPL14	0.838651	6.177942e-29	3.211356e-24	1.784087e-25
19	8005471	8049073			0.835926	1.360320e-28	7.071079e-24	3.721620e-25
20	8025395	8049073			0.834931	1.808052e-28	9.398435e-24	4.699218e-25
21	7942824	8049073			0.831801	4.373366e-28	2.273319e-23	1.082533e-24
22	8025395	8125752	NM_015921	CUTA	0.826259	1.999062e-27	1.039132e-22	4.723329e-24
23	7942824	8125752	NM_015921	CUTA	0.824865	2.905557e-27	1.510338e-22	6.566685e-24
24	8005471	8125752	NM_015921	CUTA	0.821572	6.937547e-27	3.606206e-22	1.502586e-23
25	8005471	7937476	NM_001004	RPLP2	0.819162	1.296833e-26	6.741070e-22	2.696428e-23
26	8025395	7937476	NM_001004	RPLP2	0.817456	2.008329e-26	1.043950e-21	4.015191e-23
27	7942824	7937476	NM_001004	RPLP2	0.815830	3.033586e-26	1.576888e-21	5.840327e-23
28	8005471	8072946	NM_016091	EIF3L	0.815656	3.170136e-26	1.647868e-21	5.885245e-23
29	8025395	8072946	NM_016091	EIF3L	0.803764	5.734411e-25	2.980804e-20	1.027864e-21
30	7942824	8072946	NM_016091	EIF3L	0.801280	1.024023e-24	5.322973e-20	1.774324e-21
31	8005471	8036737	NM_001020	RPS16	0.786413	2.795596e-23	1.453179e-18	4.687673e-20
32	8005471	8009561	NM_000999	RPL38	0.785277	3.560500e-23	1.850783e-18	5.783698e-20
33	8005471	8026440	NM_000984	RPL23A	0.782046	7.027001e-23	3.652705e-18	1.106880e-19
34	8025395	8101622	NM_138501	TECR	0.780656	9.380346e-23	4.875997e-18	1.434117e-19
35	8025395	8036737	NM_001020	RPS16	0.780641	9.410141e-23	4.891485e-18	1.397567e-19
36	8005471	7936463	NM_002313	ABLIM1	0.780409	9.873054e-23	5.132112e-18	1.425587e-19
37	8025395	7936463	NM_002313	ABLIM1	0.778619	1.427110e-22	7.418261e-18	2.004935e-19
38	8005471	8173513	NM_001007	RPS4X	0.778557	1.445547e-22	7.514098e-18	1.977394e-19
39	7942824	8101622	NM_138501	TECR	0.778391	1.495381e-22	7.773138e-18	1.993112e-19
40	8005471	7929593	NR_026712	RPL13AP5	0.777836	1.675213e-22	8.707923e-18	2.176981e-19
41	8025395	7929593	NR_026712	RPL13AP5	0.777230	1.895331e-22	9.852119e-18	2.402956e-19
42	7942824	8036737	NM_001020	RPS16	0.777032	1.973291e-22	1.025736e-17	2.442229e-19
43	7942824	7929593	NR_026712	RPL13AP5	0.776445	2.222740e-22	1.155402e-17	2.686982e-19
44	7942824	7936463	NM_002313	ABLIM1	0.776131	2.368700e-22	1.231274e-17	2.798350e-19
45	8005471	8005943	NM_000984	RPL23A	0.774325	3.407307e-22	1.771152e-17	3.935894e-19
46	8025395	8009561	NM_000999	RPL38	0.773917	3.697823e-22	1.922165e-17	4.178620e-19
47	8025395	8056966	ENST00000405359		0.772527	4.877681e-22	2.535467e-17	5.394611e-19
48	8025395	8026440	NM_000984	RPL23A	0.771512	5.963913e-22	3.100101e-17	6.458545e-19
49	8005471	8056966	ENST00000405359		0.771000	6.598339e-22	3.429883e-17	6.999761e-19
50	7942824	8009561	NM_000999	RPL38	0.769437	8.967125e-22	4.661201e-17	9.322403e-19

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
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