[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1471	8031726	NM_020657	ZNF304		zinc finger protein 304

Fetching correlation data, please wait...
Getting list of correlations for id 1471.
Getting list of p-values for id 1471.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.142 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8031726	7974339	ENST00000425390		0.459460	8.212181e-7	1.422925e-2	1.422925e-2
2	8031726	7923483	NM_002871	RABIF	0.459188	8.351548e-7	1.447073e-2	7.235364e-3
3	8031726	7941164	NM_004927	MRPL49	0.452802	1.235469e-6	2.140697e-2	7.135657e-3
4	8031726	7948881	NM_018093	WDR74	0.452504	1.258011e-6	2.179756e-2	5.449391e-3
5	8031726	8024623	NM_205843	NFIC	-0.442335	2.308049e-6	3.999156e-2	7.998313e-3
6	8031726	8075089	NM_001008697	TFIP11	0.442311	2.311182e-6	4.004584e-2	6.674307e-3
7	8031726	7916130	NM_138417	KTI12	0.441862	2.372989e-6	4.111678e-2	5.873826e-3
8	8031726	8025633	NM_001111307	PDE4A	-0.438554	2.877870e-6	4.986486e-2	6.233107e-3
9	8031726	8160033	NM_003094	SNRPE	0.436237	3.290301e-6	5.701104e-2	6.334560e-3
10	8031726	7960365	NM_001144958	EFCAB4B	-0.434343	3.668370e-6	6.356185e-2	6.356185e-3
11	8031726	7997852	NM_016209	TRAPPC2L	0.433965	3.748547e-6	6.495107e-2	5.904642e-3
12	8031726	7999317	NM_015421	TMEM186	0.430577	4.545077e-6	7.875254e-2	6.562712e-3
13	8031726	8027205	NM_015965	NDUFA13	0.428751	5.038249e-6	8.729775e-2	6.715211e-3
14	8031726	8123760	NR_026970	LY86AS	-0.426033	5.866425e-6	1.016475e-1	7.260539e-3
15	8031726	7991209	NM_022163	MRPL46	0.424715	6.312550e-6	1.093776e-1	7.291837e-3
16	8031726	7960143	NM_003428	ZNF84	0.422385	7.181114e-6	1.244272e-1	7.776697e-3
17	8031726	8026292	ENST00000430596		0.419955	8.205870e-6	1.421831e-1	8.363712e-3
18	8031726	7996675	NM_020457	THAP11	-0.419014	8.638565e-6	1.496804e-1	8.315579e-3
19	8031726	8114567	NM_002622	PFDN1	0.416428	9.940718e-6	1.722428e-1	9.065411e-3
20	8031726	8069561	NM_152265	BTF3L4	0.416399	9.956272e-6	1.725123e-1	8.625616e-3
21	8031726	7946228	NM_000391	TPP1	-0.414809	1.084755e-5	1.879556e-1	8.950266e-3
22	8031726	7899273	NM_006600	NUDC	0.412568	1.223232e-5	2.119495e-1	9.634068e-3
23	8031726	8088090	NM_052859	RFT1	-0.406518	1.684588e-5	2.918886e-1	1.269081e-2
24	8031726	8026875	NR_000012	SNORA68	0.405804	1.748691e-5	3.029958e-1	1.262482e-2
25	8031726	8050608	BC017473	C2orf43	0.405671	1.760942e-5	3.051184e-1	1.220473e-2
26	8031726	7908147	NR_023349	TSEN15	0.404830	1.839938e-5	3.188060e-1	1.226177e-2
27	8031726	7919226	NM_006468	POLR3C	0.403565	1.965005e-5	3.404764e-1	1.261024e-2
28	8031726	8051777	NM_004718	COX7A2L	0.401600	2.175229e-5	3.769019e-1	1.346078e-2
29	8031726	7937698	NM_001005922	KRTAP5-1	-0.401392	2.198700e-5	3.809688e-1	1.313686e-2
30	8031726	8172244	NM_173794	FUNDC1	0.400660	2.283077e-5	3.955888e-1	1.318629e-2
31	8031726	8019545	NM_001009905	B3GNTL1	0.399323	2.445216e-5	4.236825e-1	1.366718e-2
32	8031726	8163525	NR_027261	POLE3	0.398597	2.537691e-5	4.397058e-1	1.374081e-2
33	8031726	8029969	NM_003009	SEPW1	0.397482	2.686083e-5	4.654176e-1	1.410356e-2
34	8031726	8131179	NM_025250	TTYH3	-0.395815	2.923242e-5	5.065102e-1	1.489736e-2
35	8031726	8001552	NM_020313	CIAPIN1	0.395668	2.945157e-5	5.103073e-1	1.458021e-2
36	8031726	8091552			0.395609	2.953910e-5	5.118239e-1	1.421733e-2
37	8031726	8044189	ENST00000448535		0.390727	3.774136e-5	6.539445e-1	1.767417e-2
38	8031726	7991587	NM_203472	SELS	0.390218	3.870882e-5	6.707077e-1	1.765020e-2
39	8031726	7941364	NM_032223	PCNXL3	-0.390037	3.905834e-5	6.767639e-1	1.735292e-2
40	8031726	8003233	NR_027490	MTHFSD	0.389686	3.974684e-5	6.886934e-1	1.721734e-2
41	8031726	8166096	NM_152634	TCEANC	0.389669	3.978007e-5	6.892693e-1	1.681145e-2
42	8031726	8019523	NM_019613	WDR45L	0.388211	4.275744e-5	7.408582e-1	1.763948e-2
43	8031726	8085058	ENST00000333351		0.386488	4.654501e-5	8.064854e-1	1.875547e-2
44	8031726	7968915	NM_004128	GTF2F2	0.385522	4.880239e-5	8.455991e-1	1.921816e-2
45	8031726	8007058	NM_133264	WIPF2	-0.384555	5.116660e-5	8.865636e-1	1.970141e-2
46	8031726	7920382	NM_181715	CRTC2	-0.384503	5.129440e-5	8.887780e-1	1.932126e-2
47	8031726	8097056	NR_002963	SNORA24	0.384246	5.194164e-5	8.999928e-1	1.914878e-2
48	8031726	8056763	ENST00000433675		0.383802	5.307805e-5	9.196834e-1	1.916007e-2
49	8031726	8080084	NM_006010	MANF	0.383254	5.451250e-5	9.445380e-1	1.927629e-2
50	8031726	8120239	NM_014051	TMEM14A	0.383181	5.470593e-5	9.478896e-1	1.895779e-2

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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