[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
7497	8088090	NM_052859	RFT1		RFT1 homolog (S. cerevisiae)
7764	8088092	NM_052859	RFT1		RFT1 homolog (S. cerevisiae)

Fetching correlation data, please wait...
Getting list of correlations for id 7497.
Getting list of p-values for id 7497.
1 of 2 done.
Getting list of correlations for id 7764.
Getting list of p-values for id 7764.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.179 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8088092	8023165	NM_032124	HDHD2	0.769782	8.381186e-22	2.904416e-17	2.904416e-17
2	8088092	8051820	NM_022065	THADA	0.752560	2.126364e-20	7.368701e-16	3.684350e-16
3	8088092	8050658	NM_017552	ATAD2B	0.747921	4.857589e-20	1.683349e-15	5.611163e-16
4	8088092	7970413	NR_003272	PSPC1	0.746767	5.949357e-20	2.061690e-15	5.154225e-16
5	8088092	8018600	NM_014230	SRP68	0.746644	6.078201e-20	2.106340e-15	4.212679e-16
6	8088092	7969935	NM_000123	ERCC5	0.743883	9.826988e-20	3.405444e-15	5.675741e-16
7	8088092	7922250	NM_181093	SCYL3	0.738731	2.369177e-19	8.210147e-15	1.172878e-15
8	8088092	8129181	NM_020399	GOPC	0.737096	3.118985e-19	1.080853e-14	1.351066e-15
9	8088092	8114396	NM_004661	CDC23	0.733900	5.307405e-19	1.839228e-14	2.043587e-15
10	8088092	8154316	NM_152896	UHRF2	0.731817	7.475556e-19	2.590579e-14	2.590579e-15
11	8088092	8020323	NM_003799	RNMT	0.730455	9.335229e-19	3.235030e-14	2.940937e-15
12	8088092	8135235	NM_004279	PMPCB	0.729966	1.010657e-18	3.502330e-14	2.918609e-15
13	8088092	8084045	NM_033540	MFN1	0.729949	1.013423e-18	3.511917e-14	2.701474e-15
14	8088092	8131098	ENST00000402221		-0.728736	1.233122e-18	4.273262e-14	3.052330e-15
15	8088092	8017634	NM_004396	DDX5	0.727740	1.447867e-18	5.017439e-14	3.344960e-15
16	8088092	8028227	NM_152604	ZNF383	0.727682	1.461376e-18	5.064252e-14	3.165158e-15
17	8088092	7963174	NM_147190	LASS5	0.727603	1.480046e-18	5.128952e-14	3.017030e-15
18	8088092	8020930	NM_018255	ELP2	0.725622	2.031369e-18	7.039505e-14	3.910836e-15
19	8088092	8145586	NM_018091	ELP3	0.724915	2.273078e-18	7.877124e-14	4.145855e-15
20	8088092	8064581	NM_021826	FASTKD5	0.724247	2.526775e-18	8.756287e-14	4.378143e-15
21	8088092	7972190	NM_022118	RBM26	0.723486	2.849396e-18	9.874297e-14	4.702046e-15
22	8088092	8021228	NM_005359	SMAD4	0.722014	3.591362e-18	1.244551e-13	5.657048e-15
23	8088092	8053046	NM_003584	DUSP11	0.721723	3.759071e-18	1.302669e-13	5.663776e-15
24	8088092	8161632	NM_001099666	PTAR1	0.721421	3.940894e-18	1.365678e-13	5.690323e-15
25	8088092	8055060	NM_018383	WDR33	0.719740	5.119633e-18	1.774158e-13	7.096630e-15
26	8088092	8077450	NM_018184	ARL8B	0.718753	5.965464e-18	2.067272e-13	7.951046e-15
27	8088092	7973902	NM_003136	SRP54	0.718532	6.172027e-18	2.138854e-13	7.921683e-15
28	8088092	8140942	NM_001040057	FAM133B	0.718504	6.198541e-18	2.148042e-13	7.671580e-15
29	8088092	7968898	BC039586	KIAA1704	0.718332	6.365722e-18	2.205977e-13	7.606818e-15
30	8088092	7935730	NM_018294	CWF19L1	0.717804	6.904775e-18	2.392781e-13	7.975936e-15
31	8088092	8107474	NM_005509	DMXL1	0.717590	7.136238e-18	2.472992e-13	7.977393e-15
32	8088092	8129193	NM_001042475	C6orf204	0.716693	8.188634e-18	2.837689e-13	8.867779e-15
33	8088092	7918255	NM_001048210	CLCC1	0.716223	8.799195e-18	3.049273e-13	9.240221e-15
34	8088092	7914764	NM_007167	ZMYM6	0.716215	8.809809e-18	3.052951e-13	8.979268e-15
35	8088092	7902382	NM_004582	RABGGTB	0.716203	8.826488e-18	3.058731e-13	8.739232e-15
36	8088092	7941709	NM_002896	RBM4	0.715987	9.121803e-18	3.161070e-13	8.780749e-15
37	8088092	7990736	NM_014272	ADAMTS7	-0.715893	9.254140e-18	3.206930e-13	8.667377e-15
38	8088092	8092564	NM_004593	TRA2B	0.715818	9.361137e-18	3.244009e-13	8.536865e-15
39	8088092	8114861	NM_020117	LARS	0.715120	1.041003e-17	3.607490e-13	9.249975e-15
40	8088092	8104350	NM_015325	KIAA0947	0.714890	1.078050e-17	3.735873e-13	9.339683e-15
41	8088092	7903032	NM_007358	MTF2	0.714805	1.092053e-17	3.784400e-13	9.230245e-15
42	8088092	7967386	NM_022782	MPHOSPH9	0.714801	1.092786e-17	3.786939e-13	9.016521e-15
43	8088092	8152553	NM_003184	TAF2	0.713667	1.297599e-17	4.496699e-13	1.045744e-14
44	8088092	8136631	NM_003143	SSBP1	0.713160	1.400834e-17	4.854451e-13	1.103284e-14
45	8088092	7924405	NM_012414	RAB3GAP2	0.712973	1.440933e-17	4.993409e-13	1.109646e-14
46	8088092	8039010	NM_018260	ZNF701	0.712966	1.442432e-17	4.998605e-13	1.086653e-14
47	8088092	7946815	NM_002645	PIK3C2A	0.712827	1.472973e-17	5.104440e-13	1.086051e-14
48	8088092	8049598	NM_194312	ESPNL	-0.712453	1.558202e-17	5.399795e-13	1.124957e-14
49	8088092	8097704	NM_018241	TMEM184C	0.712386	1.574083e-17	5.454829e-13	1.113230e-14
50	8088092	7929168	NM_025235	TNKS2	0.712001	1.667901e-17	5.779945e-13	1.155989e-14

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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