[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3708	8038919	NM_021632	ZNF350		zinc finger protein 350

Fetching correlation data, please wait...
Getting list of correlations for id 3708.
Getting list of p-values for id 3708.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.143 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8038919	7946680	NM_032320	BTBD10	0.784017	4.647837e-23	8.053308e-19	8.053308e-19
2	8038919	7929562	NM_014803	ZNF518A	0.783448	5.239550e-23	9.078568e-19	4.539284e-19
3	8038919	8068062	NM_006447	USP16	0.770795	6.870439e-22	1.190441e-17	3.968137e-18
4	8038919	8134122	NM_005751	AKAP9	0.765403	1.957713e-21	3.392129e-17	8.480324e-18
5	8038919	7936419	NM_018017	C10orf118	0.756798	9.838943e-21	1.704794e-16	3.409587e-17
6	8038919	7900395	NM_012421	RLF	0.753238	1.881657e-20	3.260348e-16	5.433913e-17
7	8038919	8160581	NM_005802	TOPORS	0.751692	2.485249e-20	4.306191e-16	6.151701e-17
8	8038919	8022441	NM_005406	ROCK1	0.751546	2.551098e-20	4.420288e-16	5.525359e-17
9	8038919	8112388	NM_001656	TRIM23	0.749197	3.877036e-20	6.717740e-16	7.464155e-17
10	8038919	7962013	NM_016570	ERGIC2	0.748319	4.528522e-20	7.846570e-16	7.846570e-17
11	8038919	8105504	NM_152789	FAM133B	0.746383	6.363311e-20	1.102571e-15	1.002337e-16
12	8038919	8084146	NM_001013439	FXR1	0.745559	7.347529e-20	1.273106e-15	1.060922e-16
13	8038919	7938592	NM_032228	FAR1	0.742468	1.253973e-19	2.172758e-15	1.671353e-16
14	8038919	8025973	NM_144566	ZNF700	0.740861	1.650859e-19	2.860443e-15	2.043173e-16
15	8038919	7934812	NM_015045	WAPAL	0.737740	2.799462e-19	4.850628e-15	3.233752e-16
16	8038919	8147848	NM_181354	OXR1	0.737625	2.854265e-19	4.945586e-15	3.090991e-16
17	8038919	8147724	NM_001695	ATP6V1C1	0.737248	3.040544e-19	5.268351e-15	3.099030e-16
18	8038919	8053648	NM_016618	KRCC1	0.737028	3.154486e-19	5.465778e-15	3.036543e-16
19	8038919	8090237	NM_021964	ZNF148	0.736306	3.559342e-19	6.167272e-15	3.245932e-16
20	8038919	8045933	NM_004180	TANK	0.736026	3.729855e-19	6.462719e-15	3.231359e-16
21	8038919	8138401	NM_015132	SNX13	0.735810	3.866305e-19	6.699147e-15	3.190070e-16
22	8038919	7962499	NM_004719	SRSF2IP	0.735644	3.974769e-19	6.887083e-15	3.130492e-16
23	8038919	8088700	NM_007114	TMF1	0.735307	4.203998e-19	7.284268e-15	3.167073e-16
24	8038919	7934278	NM_000917	P4HA1	0.734786	4.584170e-19	7.942991e-15	3.309579e-16
25	8038919	8089527	NM_022488	ATG3	0.734065	5.165150e-19	8.949655e-15	3.579862e-16
26	8038919	7971550	NM_014166	MED4	0.733630	5.549147e-19	9.615007e-15	3.698079e-16
27	8038919	7962590	NM_024604	RPAP3	0.733626	5.553109e-19	9.621872e-15	3.563656e-16
28	8038919	7910550	NM_005999	TSNAX	0.733328	5.832711e-19	1.010634e-14	3.609406e-16
29	8038919	8138922	NM_015483	KBTBD2	0.732861	6.298370e-19	1.091319e-14	3.763167e-16
30	8038919	8120992	NM_015021	ZNF292	0.732485	6.699731e-19	1.160862e-14	3.869541e-16
31	8038919	8067017	NM_003859	DPM1	0.732319	6.885221e-19	1.193002e-14	3.848394e-16
32	8038919	8140942	NM_001040057	FAM133B	0.731529	7.835564e-19	1.357668e-14	4.242713e-16
33	8038919	8128716	NM_006016	CD164	0.730333	9.522343e-19	1.649936e-14	4.999807e-16
34	8038919	7903032	NM_007358	MTF2	0.730270	9.619147e-19	1.666710e-14	4.902087e-16
35	8038919	8055890	NM_005843	STAM2	0.729592	1.073795e-18	1.860565e-14	5.315899e-16
36	8038919	7984112	NM_016530	RAB8B	0.728344	1.313769e-18	2.276368e-14	6.323244e-16
37	8038919	7976598	NM_032632	PAPOLA	0.727599	1.480930e-18	2.566008e-14	6.935156e-16
38	8038919	8135688	NM_016200	NAA38	0.727372	1.535876e-18	2.661212e-14	7.003190e-16
39	8038919	8135497	NM_021994	ZNF277	0.726736	1.700590e-18	2.946613e-14	7.555418e-16
40	8038919	7976080	NM_003608	GPR65	0.726440	1.782970e-18	3.089352e-14	7.723381e-16
41	8038919	7932041	NM_080599	UPF2	0.726080	1.888518e-18	3.272236e-14	7.981062e-16
42	8038919	8057441	NM_020943	CWC22	0.723658	2.773504e-18	4.805650e-14	1.144202e-15
43	8038919	8090898	NM_005862	STAG1	0.723445	2.868129e-18	4.969608e-14	1.155723e-15
44	8038919	7921987	NM_019026	TMCO1	0.723366	2.903989e-18	5.031742e-14	1.143578e-15
45	8038919	8055645	NM_002552	ORC4L	0.723193	2.984217e-18	5.170752e-14	1.149056e-15
46	8038919	8021015	NM_002647	PIK3C3	0.722055	3.568208e-18	6.182634e-14	1.344051e-15
47	8038919	8113305	NM_001270	CHD1	0.721486	3.901146e-18	6.759515e-14	1.438195e-15
48	8038919	8171896	BC020611	CXorf21	0.720601	4.478769e-18	7.760362e-14	1.616742e-15
49	8038919	8055021	NM_017969	IWS1	0.720570	4.500167e-18	7.797439e-14	1.591314e-15
50	8038919	8025998	NM_003437	ZNF136	0.719724	5.132932e-18	8.893831e-14	1.778766e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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