[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4025	8055645	NM_002552	ORC4L		origin recognition complex, subunit 4-like (S. cerevisiae)

Fetching correlation data, please wait...
Getting list of correlations for id 4025.
Getting list of p-values for id 4025.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.135 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8055645	7901418	NM_152265	BTF3L4	0.874133	4.428585e-34	7.673410e-30	7.673410e-30
2	8055645	7974566	NM_018229	MUDENG	0.868521	3.611156e-33	6.257050e-29	3.128525e-29
3	8055645	8078270	NM_002948	RPL15	0.865332	1.140055e-32	1.975373e-28	6.584576e-29
4	8055645	8023735	NM_019022	TMX3	0.862761	2.820893e-32	4.887761e-28	1.221940e-28
5	8055645	8063283	NM_001316	CSE1L	0.860396	6.385557e-32	1.106425e-27	2.212851e-28
6	8055645	8088219	NM_001112736	C3orf63	0.859839	7.724282e-32	1.338386e-27	2.230644e-28
7	8055645	7984112	NM_016530	RAB8B	0.857811	1.533990e-31	2.657944e-27	3.797063e-28
8	8055645	7901867	NM_003368	USP1	0.856570	2.321496e-31	4.022457e-27	5.028071e-28
9	8055645	7973770	NM_016106	SCFD1	0.856361	2.488531e-31	4.311878e-27	4.790976e-28
10	8055645	7916570	NM_145243	OMA1	0.851659	1.153360e-30	1.998427e-26	1.998427e-27
11	8055645	8135688	NM_016200	NAA38	0.851554	1.192806e-30	2.066774e-26	1.878886e-27
12	8055645	7908421	NM_004600	TROVE2	0.851248	1.315765e-30	2.279825e-26	1.899854e-27
13	8055645	8055672	NM_015702	MMADHC	0.850796	1.519857e-30	2.633456e-26	2.025735e-27
14	8055645	8127943	NM_153816	SNX14	0.850648	1.592952e-30	2.760108e-26	1.971505e-27
15	8055645	8067295	NM_016045	SLMO2	0.849975	1.972284e-30	3.417376e-26	2.278251e-27
16	8055645	8067017	NM_003859	DPM1	0.849102	2.597996e-30	4.501547e-26	2.813467e-27
17	8055645	8134122	NM_005751	AKAP9	0.847604	4.150936e-30	7.192327e-26	4.230781e-27
18	8055645	7910550	NM_005999	TSNAX	0.847460	4.340842e-30	7.521377e-26	4.178543e-27
19	8055645	7929562	NM_014803	ZNF518A	0.846731	5.443190e-30	9.431416e-26	4.963903e-27
20	8055645	7976598	NM_032632	PAPOLA	0.846385	6.056490e-30	1.049408e-25	5.247040e-27
21	8055645	7980940	NM_004993	ATXN3	0.845677	7.530778e-30	1.304858e-25	6.213609e-27
22	8055645	7962013	NM_016570	ERGIC2	0.845659	7.571202e-30	1.311862e-25	5.963010e-27
23	8055645	7939137	NM_006360	EIF3M	0.845621	7.661270e-30	1.327468e-25	5.771601e-27
24	8055645	8052526	NM_003400	XPO1	0.840999	3.092872e-29	5.359019e-25	2.232924e-26
25	8055645	8084128	NM_133462	TTC14	0.840900	3.184713e-29	5.518152e-25	2.207261e-26
26	8055645	8158372	NM_003011	SET	0.839778	4.438538e-29	7.690654e-25	2.957944e-26
27	8055645	8045697	NM_018151	RIF1	0.839360	5.018671e-29	8.695852e-25	3.220686e-26
28	8055645	7913712	NM_006625	SRSF10	0.838327	6.790869e-29	1.176654e-24	4.202335e-26
29	8055645	8090237	NM_021964	ZNF148	0.838263	6.918376e-29	1.198747e-24	4.133610e-26
30	8055645	8084986	NM_032288	FYTTD1	0.836788	1.061339e-28	1.838981e-24	6.129938e-26
31	8055645	8128716	NM_006016	CD164	0.836739	1.076574e-28	1.865379e-24	6.017352e-26
32	8055645	8070341	NM_033656	BRWD1	0.836525	1.145044e-28	1.984018e-24	6.200056e-26
33	8055645	7956937	NM_015646	RAP1B	0.835232	1.659230e-28	2.874949e-24	8.711965e-26
34	8055645	8046759	NM_018981	DNAJC10	0.834801	1.876128e-28	3.250768e-24	9.561082e-26
35	8055645	7950544	NM_004705	PRKRIR	0.833931	2.402152e-28	4.162210e-24	1.189203e-25
36	8055645	7916969	NM_005455	ZRANB2	0.833648	2.602370e-28	4.509126e-24	1.252535e-25
37	8055645	8112728	NM_001089704	RAP1BL	0.833000	3.124164e-28	5.413238e-24	1.463037e-25
38	8055645	8044766	NM_016133	INSIG2	0.832537	3.558891e-28	6.166491e-24	1.622761e-25
39	8055645	8069711	NM_015565	RNF160	0.832172	3.942276e-28	6.830782e-24	1.751483e-25
40	8055645	7976080	NM_003608	GPR65	0.831745	4.441972e-28	7.696605e-24	1.924151e-25
41	8055645	8069574	NM_001100420	C21orf91	0.831622	4.596967e-28	7.965165e-24	1.942723e-25
42	8055645	8089584	NM_015412	C3orf17	0.831535	4.710236e-28	8.161427e-24	1.943197e-25
43	8055645	8084016	NM_006218	PIK3CA	0.831280	5.055845e-28	8.760262e-24	2.037270e-25
44	8055645	8078834	NM_020839	WDR48	0.831135	5.264613e-28	9.121996e-24	2.073181e-25
45	8055645	7922870	NM_030934	C1orf25	0.830946	5.548800e-28	9.614406e-24	2.136535e-25
46	8055645	7975113	NM_145165	CHURC1	0.830679	5.975662e-28	1.035403e-23	2.250876e-25
47	8055645	7968516	NM_015032	PDS5B	0.830291	6.651982e-28	1.152589e-23	2.452317e-25
48	8055645	8042270	NM_001001521	UGP2	0.830134	6.948117e-28	1.203900e-23	2.508126e-25
49	8055645	8120382	NM_001031623	ZNF451	0.829799	7.621209e-28	1.320527e-23	2.694953e-25
50	8055645	8047815	NM_001136194	FASTKD2	0.829773	7.674493e-28	1.329759e-23	2.659519e-25

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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