[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7272	7901867	NM_003368	USP1		ubiquitin specific peptidase 1

Fetching correlation data, please wait...
Getting list of correlations for id 7272.
Getting list of p-values for id 7272.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.127 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7901867	8135688	NM_016200	NAA38	0.899965	6.344761e-39	1.099357e-34	1.099357e-34
2	7901867	7989885	NM_001031723	DNAJB14	0.877710	1.102483e-34	1.910273e-30	9.551363e-31
3	7901867	7929562	NM_014803	ZNF518A	0.876608	1.699651e-34	2.944985e-30	9.816616e-31
4	7901867	7923119	NM_194314	ZBTB41	0.870116	2.008714e-33	3.480498e-29	8.701245e-30
5	7901867	8023735	NM_019022	TMX3	0.865824	9.567832e-33	1.657818e-28	3.315636e-29
6	7901867	8078270	NM_002948	RPL15	0.863552	2.138820e-32	3.705934e-28	6.176556e-29
7	7901867	8142307	NM_015723	PNPLA8	0.860027	7.245912e-32	1.255499e-27	1.793570e-28
8	7901867	8127943	NM_153816	SNX14	0.858233	1.330766e-31	2.305818e-27	2.882272e-28
9	7901867	8055645	NM_002552	ORC4L	0.856570	2.321496e-31	4.022457e-27	4.469397e-28
10	7901867	8106303	NM_016218	POLK	0.856526	2.355852e-31	4.081985e-27	4.081985e-28
11	7901867	8097066	NM_020961	METTL14	0.855293	3.542324e-31	6.137785e-27	5.579804e-28
12	7901867	7988605	NM_004236	COPS2	0.855180	3.676095e-31	6.369570e-27	5.307975e-28
13	7901867	7946635	NM_021211	ZBED5	0.854503	4.591978e-31	7.956520e-27	6.120400e-28
14	7901867	7916969	NM_005455	ZRANB2	0.853213	6.989413e-31	1.211056e-26	8.650397e-28
15	7901867	8020068	NM_015208	ANKRD12	0.853184	7.056165e-31	1.222622e-26	8.150812e-28
16	7901867	8036813	NM_001005851	ZNF780B	0.852518	8.751021e-31	1.516289e-26	9.476809e-28
17	7901867	8022473	NM_052911	ESCO1	0.851972	1.043296e-30	1.807718e-26	1.063364e-27
18	7901867	7975068	NM_001123329	ZBTB1	0.846628	5.618855e-30	9.735791e-26	5.408773e-27
19	7901867	7927267	NM_019054	FAM35A	0.844379	1.119779e-29	1.940240e-25	1.021179e-26
20	7901867	7989159	NM_017661	ZNF280D	0.844295	1.148559e-29	1.990109e-25	9.950545e-27
21	7901867	7916570	NM_145243	OMA1	0.843561	1.434859e-29	2.486180e-25	1.183895e-26
22	7901867	8055913	NM_017892	PRPF40A	0.843259	1.571971e-29	2.723754e-25	1.238070e-26
23	7901867	7927786	NM_001001330	REEP3	0.841537	2.635411e-29	4.566376e-25	1.985381e-26
24	7901867	8140942	NM_001040057	FAM133B	0.841022	3.071843e-29	5.322582e-25	2.217743e-26
25	7901867	7917604	NM_201269	ZNF644	0.840983	3.107716e-29	5.384739e-25	2.153896e-26
26	7901867	7902634	NM_025065	RPF1	0.840883	3.201169e-29	5.546666e-25	2.133333e-26
27	7901867	8113064	NM_198273	LYSMD3	0.840647	3.433369e-29	5.948998e-25	2.203333e-26
28	7901867	8151549	NM_005536	IMPA1	0.840557	3.525735e-29	6.109042e-25	2.181801e-26
29	7901867	8121031	NM_006416	SLC35A1	0.840550	3.533046e-29	6.121709e-25	2.110934e-26
30	7901867	8046759	NM_018981	DNAJC10	0.840105	4.030700e-29	6.983995e-25	2.327998e-26
31	7901867	8084128	NM_133462	TTC14	0.839734	4.496677e-29	7.791392e-25	2.513352e-26
32	7901867	7980940	NM_004993	ATXN3	0.838800	5.914183e-29	1.024751e-24	3.202345e-26
33	7901867	7938448	NM_017944	USP47	0.838154	7.141192e-29	1.237354e-24	3.749559e-26
34	7901867	8052526	NM_003400	XPO1	0.838083	7.292197e-29	1.263519e-24	3.716232e-26
35	7901867	7974566	NM_018229	MUDENG	0.836776	1.064920e-28	1.845188e-24	5.271964e-26
36	7901867	8063283	NM_001316	CSE1L	0.836473	1.162171e-28	2.013694e-24	5.593594e-26
37	7901867	8081069	NM_018293	ZNF654	0.835770	1.422638e-28	2.465005e-24	6.662175e-26
38	7901867	7962013	NM_016570	ERGIC2	0.835716	1.444681e-28	2.503199e-24	6.587367e-26
39	7901867	8121161	NM_015323	KIAA0776	0.835123	1.711617e-28	2.965719e-24	7.604408e-26
40	7901867	7950544	NM_004705	PRKRIR	0.834211	2.218860e-28	3.844619e-24	9.611548e-26
41	7901867	7898910	NM_017761	PNRC2	0.833726	2.545716e-28	4.410962e-24	1.075844e-25
42	7901867	8039933	NM_017761	PNRC2	0.833726	2.545716e-28	4.410962e-24	1.050229e-25
43	7901867	7976080	NM_003608	GPR65	0.832636	3.460966e-28	5.996816e-24	1.394608e-25
44	7901867	7935320	NM_020123	TM9SF3	0.832492	3.603586e-28	6.243933e-24	1.419076e-25
45	7901867	7951447	NM_152434	CWF19L2	0.832429	3.668605e-28	6.356592e-24	1.412576e-25
46	7901867	8113157	NM_014639	TTC37	0.831896	4.258676e-28	7.379008e-24	1.604132e-25
47	7901867	7974483	NM_182926	KTN1	0.831868	4.291318e-28	7.435567e-24	1.582036e-25
48	7901867	7936419	NM_018017	C10orf118	0.831322	4.997391e-28	8.658980e-24	1.803954e-25
49	7901867	8151788	NM_203390	RBM12B	0.831300	5.028211e-28	8.712381e-24	1.778037e-25
50	7901867	8105353	NM_015360	SKIV2L2	0.831072	5.357062e-28	9.282182e-24	1.856436e-25

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
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