[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2551	8057056	NM_133378	TTN		titin

Fetching correlation data, please wait...
Getting list of correlations for id 2551.
Getting list of p-values for id 2551.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.133 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8057056	8112865	NM_178276	SERINC5	0.701045	8.320218e-17	1.441644e-12	1.441644e-12
2	8057056	8078173	NM_138381	OXNAD1	0.694409	2.126620e-16	3.684795e-12	1.842397e-12
3	8057056	7952601	NM_001143820	ETS1	0.691177	3.328352e-16	5.767036e-12	1.922345e-12
4	8057056	8102232	NM_016269	LEF1	0.688856	4.575061e-16	7.927208e-12	1.981802e-12
5	8057056	8015031	NM_001838	CCR7	0.682240	1.114918e-15	1.931818e-11	3.863636e-12
6	8057056	8128247	NM_021813	BACH2	0.681897	1.166894e-15	2.021877e-11	3.369794e-12
7	8057056	8128138	NM_014611	MDN1	0.678396	1.850990e-15	3.207210e-11	4.581728e-12
8	8057056	7936463	NM_002313	ABLIM1	0.677075	2.199253e-15	3.810645e-11	4.763306e-12
9	8057056	7963851	NM_001098815	KIAA0748	0.672268	4.087931e-15	7.083157e-11	7.870175e-12
10	8057056	8085716	NM_002971	SATB1	0.671809	4.334763e-15	7.510844e-11	7.510844e-12
11	8057056	8041995	NM_003128	SPTBN1	0.670386	5.194892e-15	9.001190e-11	8.182900e-12
12	8057056	7996772	NM_003983	SLC7A6	0.667671	7.316939e-15	1.267806e-10	1.056505e-11
13	8057056	8046380	NM_000210	ITGA6	0.665748	9.307034e-15	1.612630e-10	1.240484e-11
14	8057056	8063437	NM_173485	TSHZ2	0.664099	1.142273e-14	1.979216e-10	1.413725e-11
15	8057056	7910752	NM_000254	MTR	0.663521	1.226913e-14	2.125871e-10	1.417248e-11
16	8057056	8145259	NM_152272	CHMP7	0.662453	1.399489e-14	2.424894e-10	1.515559e-11
17	8057056	8088468	AF134979	NPCDR1	0.658545	2.255654e-14	3.908371e-10	2.299042e-11
18	8057056	7972487	NM_015296	DOCK9	0.657447	2.575946e-14	4.463341e-10	2.479634e-11
19	8057056	8088776	NM_032682	FOXP1	0.653038	4.367570e-14	7.567689e-10	3.982994e-11
20	8057056	8011275	NM_024086	METT10D	0.646652	9.239000e-14	1.600841e-9	8.004207e-11
21	8057056	7898939	NM_020448	NIPAL3	0.646003	9.960752e-14	1.725900e-9	8.218569e-11
22	8057056	8023646	NM_000633	BCL2	0.644454	1.190960e-13	2.063576e-9	9.379893e-11
23	8057056	8009301	NM_002737	PRKCA	0.639718	2.043622e-13	3.540984e-9	1.539558e-10
24	8057056	7901804	NM_176877	INADL	0.638709	2.289910e-13	3.967727e-9	1.653220e-10
25	8057056	8075483	NM_052880	PIK3IP1	0.637790	2.539169e-13	4.399619e-9	1.759848e-10
26	8057056	8109526			0.635163	3.405321e-13	5.900399e-9	2.269384e-10
27	8057056	8142100	NM_020725	ATXN7L1	0.634815	3.539641e-13	6.133137e-9	2.271532e-10
28	8057056	7951140	AY358248	LOC100131541	0.634782	3.552303e-13	6.155076e-9	2.198241e-10
29	8057056	8146159	NM_001134296	AP3M2	0.632490	4.577130e-13	7.930794e-9	2.734756e-10
30	8057056	8169263	NM_182607	VSIG1	0.631594	5.050920e-13	8.751729e-9	2.917243e-10
31	8057056	8088458	NM_002012	FHIT	0.631262	5.237974e-13	9.075837e-9	2.927689e-10
32	8057056	7923917	NM_005449	FAIM3	0.630774	5.525755e-13	9.574476e-9	2.992024e-10
33	8057056	7956046	NM_201444	DGKA	0.628457	7.112694e-13	1.232416e-8	3.734595e-10
34	8057056	8043504	NM_002371	MAL	0.626734	8.569787e-13	1.484887e-8	4.367315e-10
35	8057056	7909545	NM_145759	TRAF5	0.622785	1.307986e-12	2.266348e-8	6.475280e-10
36	8057056	8084717	NM_173216	ST6GAL1	0.621712	1.465732e-12	2.539674e-8	7.054651e-10
37	8057056	8112881	ENST00000459419		0.621346	1.523582e-12	2.639910e-8	7.134892e-10
38	8057056	8115886	NM_032361	THOC3	0.619005	1.949655e-12	3.378167e-8	8.889913e-10
39	8057056	8046086	NM_203463	LASS6	0.617416	2.302209e-12	3.989037e-8	1.022830e-9
40	8057056	8053379	AK296608	C2orf89	0.616883	2.433929e-12	4.217269e-8	1.054317e-9
41	8057056	7898957	NM_013441	RCAN3	0.614205	3.212335e-12	5.566013e-8	1.357564e-9
42	8057056	7955045	BC008360	FAM113B	0.612982	3.643122e-12	6.312437e-8	1.502961e-9
43	8057056	8145532	NM_001979	EPHX2	0.612129	3.976158e-12	6.889488e-8	1.602207e-9
44	8057056	8112139	NM_002184	IL6ST	0.609118	5.402855e-12	9.361527e-8	2.127620e-9
45	8057056	8059413	NM_014689	DOCK10	0.608789	5.586060e-12	9.678967e-8	2.150882e-9
46	8057056	8156319	NR_002822	MGC72080	0.607229	6.538720e-12	1.132964e-7	2.462965e-9
47	8057056	8047677	NM_006139	CD28	0.606780	6.840568e-12	1.185265e-7	2.521841e-9
48	8057056	8110408	NM_032361	THOC3	0.606641	6.936614e-12	1.201907e-7	2.503973e-9
49	8057056	8174692	NM_145799	SEPT6	0.606523	7.019520e-12	1.216272e-7	2.482188e-9
50	8057056	7963750	NM_012117	CBX5	0.605436	7.826887e-12	1.356165e-7	2.712329e-9

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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