[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 12 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
13184	8156319	NR_002822	MGC72080		MGC72080 pseudogene
14275	8042574	NR_002822	MGC72080		MGC72080 pseudogene
14327	8045887	NR_002822	MGC72080		MGC72080 pseudogene
14368	7968787	NR_002822	MGC72080		MGC72080 pseudogene
14374	8138151	NR_002822	MGC72080		MGC72080 pseudogene
14379	7971241	NR_002822	MGC72080		MGC72080 pseudogene
14402	7945873	NR_002822	MGC72080		MGC72080 pseudogene
14569	8141169	NR_002822	MGC72080		MGC72080 pseudogene
14642	7938683	NR_002822	MGC72080		MGC72080 pseudogene
14655	8138145	NR_002822	MGC72080		MGC72080 pseudogene
14845	8082248	NR_002822	MGC72080		MGC72080 pseudogene
14945	8082244	NR_002822	MGC72080		MGC72080 pseudogene

Fetching correlation data, please wait...
Getting list of correlations for id 13184.
Getting list of p-values for id 13184.
1 of 12 done.
Getting list of correlations for id 14275.
Getting list of p-values for id 14275.
2 of 12 done.
Getting list of correlations for id 14327.
Getting list of p-values for id 14327.
3 of 12 done.
Getting list of correlations for id 14368.
Getting list of p-values for id 14368.
4 of 12 done.
Getting list of correlations for id 14374.
Getting list of p-values for id 14374.
5 of 12 done.
Getting list of correlations for id 14379.
Getting list of p-values for id 14379.
6 of 12 done.
Getting list of correlations for id 14402.
Getting list of p-values for id 14402.
7 of 12 done.
Getting list of correlations for id 14569.
Getting list of p-values for id 14569.
8 of 12 done.
Getting list of correlations for id 14642.
Getting list of p-values for id 14642.
9 of 12 done.
Getting list of correlations for id 14655.
Getting list of p-values for id 14655.
10 of 12 done.
Getting list of correlations for id 14845.
Getting list of p-values for id 14845.
11 of 12 done.
Getting list of correlations for id 14945.
Getting list of p-values for id 14945.
12 of 12 done.
Calculating corrections for multiple testing (n=207924), please wait...
Done; whole program took 1.353 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7971241	7968787	NR_002822	MGC72080	0.998742	1.048360e-135	2.179792e-130	2.179792e-130
2	7968787	7971241	NR_002822	MGC72080	0.998742	1.048360e-135	2.179792e-130	1.089896e-130
3	8045887	7971241	NR_002822	MGC72080	0.996844	3.689542e-115	7.671444e-110	2.557148e-110
4	7971241	8045887	NR_002822	MGC72080	0.996844	3.689542e-115	7.671444e-110	1.917861e-110
5	7968787	8045887	NR_002822	MGC72080	0.995881	3.260398e-109	6.779149e-104	1.355830e-104
6	8045887	7968787	NR_002822	MGC72080	0.995881	3.260398e-109	6.779149e-104	1.129858e-104
7	8082248	7968787	NR_002822	MGC72080	0.969409	1.186841e-64	2.467727e-59	3.525324e-60
8	7968787	8082248	NR_002822	MGC72080	0.969409	1.186841e-64	2.467727e-59	3.084658e-60
9	8082248	7971241	NR_002822	MGC72080	0.964786	1.482884e-61	3.083272e-56	3.425858e-57
10	7971241	8082248	NR_002822	MGC72080	0.964786	1.482884e-61	3.083272e-56	3.083272e-57
11	7945873	7971241	NR_002822	MGC72080	0.963627	7.638568e-61	1.588242e-55	1.443856e-56
12	7971241	7945873	NR_002822	MGC72080	0.963627	7.638568e-61	1.588242e-55	1.323535e-56
13	7945873	7968787	NR_002822	MGC72080	0.963616	7.752964e-61	1.612027e-55	1.240021e-56
14	7968787	7945873	NR_002822	MGC72080	0.963616	7.752964e-61	1.612027e-55	1.151448e-56
15	7945873	8045887	NR_002822	MGC72080	0.959912	1.040443e-58	2.163330e-53	1.442220e-54
16	8045887	7945873	NR_002822	MGC72080	0.959912	1.040443e-58	2.163330e-53	1.352081e-54
17	8045887	8082248	NR_002822	MGC72080	0.955165	2.940755e-56	6.114535e-51	3.596785e-52
18	8082248	8045887	NR_002822	MGC72080	0.955165	2.940755e-56	6.114535e-51	3.396964e-52
19	8156319	8045887	NR_002822	MGC72080	0.954843	4.215587e-56	8.765217e-51	4.613272e-52
20	8045887	8156319	NR_002822	MGC72080	0.954843	4.215587e-56	8.765217e-51	4.382608e-52
21	8082244	8082248	NR_002822	MGC72080	0.950076	6.556080e-54	1.363166e-48	6.491268e-50
22	8082248	8082244	NR_002822	MGC72080	0.950076	6.556080e-54	1.363166e-48	6.196211e-50
23	8156319	7971241	NR_002822	MGC72080	0.948416	3.389613e-53	7.047819e-48	3.064269e-49
24	7971241	8156319	NR_002822	MGC72080	0.948416	3.389613e-53	7.047819e-48	2.936591e-49
25	8156319	7968787	NR_002822	MGC72080	0.944415	1.434543e-51	2.982760e-46	1.193104e-47
26	7968787	8156319	NR_002822	MGC72080	0.944415	1.434543e-51	2.982760e-46	1.147215e-47
27	8082244	8042574	NR_002822	MGC72080	0.938560	2.147159e-49	4.464459e-44	1.653503e-45
28	8042574	8082244	NR_002822	MGC72080	0.938560	2.147159e-49	4.464459e-44	1.594450e-45
29	7945873	8082248	NR_002822	MGC72080	0.934213	6.493238e-48	1.350100e-42	4.655517e-44
30	8082248	7945873	NR_002822	MGC72080	0.934213	6.493238e-48	1.350100e-42	4.500333e-44
31	7945873	8156319	NR_002822	MGC72080	0.915159	1.945400e-42	4.044954e-37	1.304824e-38
32	8156319	7945873	NR_002822	MGC72080	0.915159	1.945400e-42	4.044954e-37	1.264048e-38
33	8042574	8082248	NR_002822	MGC72080	0.912683	8.025220e-42	1.668636e-36	5.056472e-38
34	8082248	8042574	NR_002822	MGC72080	0.912683	8.025220e-42	1.668636e-36	4.907753e-38
35	7938683	8042574	NR_002822	MGC72080	0.908741	7.044178e-41	1.464654e-35	4.184725e-37
36	8042574	7938683	NR_002822	MGC72080	0.908741	7.044178e-41	1.464654e-35	4.068482e-37
37	7968787	8082244	NR_002822	MGC72080	0.900516	4.843826e-39	1.007148e-33	2.722021e-35
38	8082244	7968787	NR_002822	MGC72080	0.900516	4.843826e-39	1.007148e-33	2.650389e-35
39	7971241	8082244	NR_002822	MGC72080	0.894742	7.614165e-38	1.583168e-32	4.059404e-34
40	8082244	7971241	NR_002822	MGC72080	0.894742	7.614165e-38	1.583168e-32	3.957919e-34
41	8138145	8042574	NR_002822	MGC72080	0.890202	5.953365e-37	1.237847e-31	3.019140e-33
42	8042574	8138145	NR_002822	MGC72080	0.890202	5.953365e-37	1.237847e-31	2.947256e-33
43	8082248	8156319	NR_002822	MGC72080	0.883687	9.769341e-36	2.031280e-30	4.723908e-32
44	8156319	8082248	NR_002822	MGC72080	0.883687	9.769341e-36	2.031280e-30	4.616547e-32
45	8082244	7938683	NR_002822	MGC72080	0.877597	1.152738e-34	2.396819e-29	5.326265e-31
46	7938683	8082244	NR_002822	MGC72080	0.877597	1.152738e-34	2.396819e-29	5.210477e-31
47	8042574	7945873	NR_002822	MGC72080	0.876003	2.152178e-34	4.474894e-29	9.521051e-31
48	7945873	8042574	NR_002822	MGC72080	0.876003	2.152178e-34	4.474894e-29	9.322696e-31
49	8082244	8045887	NR_002822	MGC72080	0.874742	3.506106e-34	7.290036e-29	1.487762e-30
50	8045887	8082244	NR_002822	MGC72080	0.874742	3.506106e-34	7.290036e-29	1.458007e-30

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation