[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5456	8078262	NM_003341	UBE2E1		ubiquitin-conjugating enzyme E2E 1 (UBC4/5 homolog, yeast)

Fetching correlation data, please wait...
Getting list of correlations for id 5456.
Getting list of p-values for id 5456.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.095 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8078262	7905349	NM_024575	TNFAIP8L2	0.463802	6.262562e-7	1.085114e-2	1.085114e-2
2	8078262	7910099	NM_001130440	SRP9	0.460463	7.716223e-7	1.336990e-2	6.684950e-3
3	8078262	7907124	NM_152902	TIPRL	0.456730	9.719386e-7	1.684078e-2	5.613593e-3
4	8078262	7968972	NM_005694	COX17	0.455881	1.023941e-6	1.774183e-2	4.435456e-3
5	8078262	7921667	NM_001778	CD48	0.455473	1.049822e-6	1.819027e-2	3.638053e-3
6	8078262	7990528	NM_005701	SNUPN	0.451214	1.360137e-6	2.356709e-2	3.927848e-3
7	8078262	8099912	BC008502	C4orf34	0.445946	1.864792e-6	3.231126e-2	4.615894e-3
8	8078262	8014066	NM_001003927	EVI2A	0.445545	1.909655e-6	3.308859e-2	4.136074e-3
9	8078262	7973936	NM_002791	PSMA6	0.437757	3.013878e-6	5.222147e-2	5.802386e-3
10	8078262	7977775	NM_001344	DAD1	0.434859	3.561544e-6	6.171088e-2	6.171088e-3
11	8078262	8100782			-0.434183	3.702063e-6	6.414565e-2	5.831423e-3
12	8078262	8123825	NM_015948	SLC35B3	0.422707	7.054622e-6	1.222354e-1	1.018629e-2
13	8078262	7927799	ENST00000298249		0.422101	7.294336e-6	1.263890e-1	9.722228e-3
14	8078262	8121031	NM_006416	SLC35A1	0.421900	7.375504e-6	1.277954e-1	9.128240e-3
15	8078262	7971565	NM_005767	LPAR6	0.421467	7.552913e-6	1.308693e-1	8.724622e-3
16	8078262	7898875	NM_000975	RPL11	0.419610	8.361793e-6	1.448848e-1	9.055299e-3
17	8078262	8089795	NM_005694	COX17	0.418884	8.699754e-6	1.507406e-1	8.867096e-3
18	8078262	7917741	NM_016040	TMED5	0.418322	8.970079e-6	1.554246e-1	8.634698e-3
19	8078262	7971375	NM_003295	TPT1	0.417602	9.328071e-6	1.616275e-1	8.506709e-3
20	8078262	8016552	NM_002634	PHB	0.411502	1.294751e-5	2.243416e-1	1.121708e-2
21	8078262	8135250	NM_002803	PSMC2	0.410928	1.334871e-5	2.312931e-1	1.101396e-2
22	8078262	8163948	NR_027125	RBM18	0.409615	1.431120e-5	2.479702e-1	1.127137e-2
23	8078262	7968670	NM_016617	UFM1	0.407791	1.575700e-5	2.730215e-1	1.187050e-2
24	8078262	7951207	NM_052932	TMEM123	0.407583	1.592996e-5	2.760185e-1	1.150077e-2
25	8078262	7948504	NM_017966	VPS37C	-0.407556	1.595250e-5	2.764089e-1	1.105636e-2
26	8078262	8040036	NM_001011	RPS7	0.407444	1.604666e-5	2.780405e-1	1.069386e-2
27	8078262	8110022	NM_003945	ATP6V0E1	0.406698	1.668804e-5	2.891536e-1	1.070939e-2
28	8078262	8163999	NM_006626	ZBTB6	0.405142	1.810208e-5	3.136548e-1	1.120196e-2
29	8078262	8104738	NM_006713	SUB1	0.404839	1.839050e-5	3.186522e-1	1.098801e-2
30	8078262	7903582	NM_001035006	RPL17	0.404367	1.884810e-5	3.265810e-1	1.088603e-2
31	8078262	8113491	NM_139164	STARD4	0.404341	1.887362e-5	3.270232e-1	1.054914e-2
32	8078262	7938669	NM_014267	C11orf58	0.403348	1.987255e-5	3.443316e-1	1.076036e-2
33	8078262	8094974	NM_001079839	OCIAD1	0.401824	2.150285e-5	3.725799e-1	1.129030e-2
34	8078262	7956613	NM_005981	TSPAN31	0.401823	2.150373e-5	3.725951e-1	1.095868e-2
35	8078262	8110218	NM_001099408	EIF4E1B	-0.401441	2.193116e-5	3.800012e-1	1.085718e-2
36	8078262	8137962	AK125308	LOC100129484	-0.400741	2.273616e-5	3.939495e-1	1.094304e-2
37	8078262	8112967	NM_174909	TMEM167A	0.400721	2.276034e-5	3.943685e-1	1.065861e-2
38	8078262	8157021	NM_015469	NIPSNAP3A	0.400709	2.277380e-5	3.946016e-1	1.038425e-2
39	8078262	7916643	NM_032027	TM2D1	0.400380	2.316218e-5	4.013311e-1	1.029054e-2
40	8078262	8037152	NM_019884	GSK3A	-0.399952	2.367658e-5	4.102440e-1	1.025610e-2
41	8078262	7901135	NM_016486	TMEM69	0.399480	2.425689e-5	4.202992e-1	1.025120e-2
42	8078262	7951034	NR_002920	SNORA8	0.398645	2.531503e-5	4.386335e-1	1.044366e-2
43	8078262	7901746			-0.397930	2.625501e-5	4.549206e-1	1.057955e-2
44	8078262	8093256	ENST00000452862		0.397576	2.673325e-5	4.632070e-1	1.052743e-2
45	8078262	8061136	NM_002823	PTMA	0.397111	2.737301e-5	4.742922e-1	1.053983e-2
46	8078262	8105481	NM_152687	GAPT	0.396976	2.756118e-5	4.775526e-1	1.038158e-2
47	8078262	7918847	NM_001102396	SIKE1	0.396496	2.824097e-5	4.893313e-1	1.041130e-2
48	8078262	7989013	NM_016304	RSL24D1	0.395756	2.932112e-5	5.080471e-1	1.058431e-2
49	8078262	8138531	NM_001402	EEF1A1	0.394713	3.090735e-5	5.355317e-1	1.092922e-2
50	8078262	8159501	NM_178536	LCN12	-0.394639	3.102343e-5	5.375430e-1	1.075086e-2

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation