[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
628	8164967	NM_001134398	VAV2		vav 2 guanine nucleotide exchange factor

Fetching correlation data, please wait...
Getting list of correlations for id 628.
Getting list of p-values for id 628.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.119 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8164967	8037123	NM_002698	POU2F2	0.561987	4.437803e-10	7.689382e-6	7.689382e-6
2	8164967	8074274	NM_015241	MICAL3	0.478868	2.373932e-7	4.113311e-3	2.056656e-3
3	8164967	7993195	NM_000246	CIITA	0.470723	4.033767e-7	6.989308e-3	2.329769e-3
4	8164967	8141445	BC015722	C7orf43	0.467709	4.891194e-7	8.474971e-3	2.118743e-3
5	8164967	8141535	NM_002319	LRCH4	0.463230	6.491278e-7	1.124744e-2	2.249488e-3
6	8164967	7994637	NM_001042539	MAZ	0.454146	1.138487e-6	1.972656e-2	3.287760e-3
7	8164967	7967544	NM_005505	SCARB1	0.453081	1.214739e-6	2.104779e-2	3.006827e-3
8	8164967	8125220	NM_005510	DOM3Z	0.452918	1.226832e-6	2.125732e-2	2.657165e-3
9	8164967	8178699	NM_005510	DOM3Z	0.452918	1.226832e-6	2.125732e-2	2.361925e-3
10	8164967	8166264	ENST00000458802		-0.439478	2.727506e-6	4.725950e-2	4.725950e-3
11	8164967	8080144	NM_001003931	PARP3	0.438313	2.918461e-6	5.056818e-2	4.597107e-3
12	8164967	8129410	NM_001010923	THEMIS	-0.433394	3.872744e-6	6.710304e-2	5.591920e-3
13	8164967	8179926	NM_005510	DOM3Z	0.432502	4.074901e-6	7.060581e-2	5.431216e-3
14	8164967	8029580	NM_006509	RELB	0.428510	5.106787e-6	8.848530e-2	6.320379e-3
15	8164967	7949383	NM_032431	SYVN1	0.427287	5.469589e-6	9.477157e-2	6.318105e-3
16	8164967	7976292	NM_024832	RIN3	0.423814	6.636182e-6	1.149851e-1	7.186571e-3
17	8164967	8075637	NM_004737	LARGE	0.422328	7.203656e-6	1.248177e-1	7.342220e-3
18	8164967	8124654	NM_001470	GABBR1	0.420697	7.879179e-6	1.365225e-1	7.584585e-3
19	8164967	8104506	NM_007118	TRIO	0.417694	9.281696e-6	1.608239e-1	8.464418e-3
20	8164967	8011640	NM_014520	MYBBP1A	0.413977	1.134354e-5	1.965496e-1	9.827480e-3
21	8164967	7941865	NM_004584	RAD9A	0.413154	1.185491e-5	2.054100e-1	9.781429e-3
22	8164967	8096032	NM_020226	PRDM8	0.411574	1.289828e-5	2.234885e-1	1.015857e-2
23	8164967	8178298	NM_001470	GABBR1	0.411301	1.308713e-5	2.267606e-1	9.859158e-3
24	8164967	8036110	NM_000704	ATP4A	0.406807	1.659300e-5	2.875069e-1	1.197945e-2
25	8164967	8032650	NM_012398	PIP5K1C	0.405876	1.742177e-5	3.018670e-1	1.207468e-2
26	8164967	8071339	NM_013373	ZDHHC8	0.405572	1.770028e-5	3.066928e-1	1.179588e-2
27	8164967	8098916	NM_001127266	TMEM129	0.403088	2.014220e-5	3.490039e-1	1.292607e-2
28	8164967	7994874	NM_001105079	FBRS	0.402424	2.084666e-5	3.612101e-1	1.290036e-2
29	8164967	8137739	NM_001080453	INTS1	0.402305	2.097551e-5	3.634426e-1	1.253251e-2
30	8164967	7928218	NM_022124	CDH23	0.401777	2.155470e-5	3.734783e-1	1.244928e-2
31	8164967	8076161	NM_005740	DNAL4	0.400071	2.353308e-5	4.077576e-1	1.315347e-2
32	8164967	7994981	NM_152288	ORAI3	0.399773	2.389547e-5	4.140368e-1	1.293865e-2
33	8164967	8151118	NM_025054	VCPIP1	-0.399466	2.427394e-5	4.205945e-1	1.274529e-2
34	8164967	8074541	NM_022727	TRMT2A	0.399076	2.476280e-5	4.290650e-1	1.261956e-2
35	8164967	8179595	NM_001470	GABBR1	0.397930	2.625497e-5	4.549198e-1	1.299771e-2
36	8164967	8035040	NM_021241	WIZ	0.396506	2.822723e-5	4.890931e-1	1.358592e-2
37	8164967	7984276	NM_004727	SLC24A1	0.393573	3.273284e-5	5.671619e-1	1.532870e-2
38	8164967	8033969	NM_133452	RAVER1	0.393105	3.351096e-5	5.806444e-1	1.528012e-2
39	8164967	7996571	NM_024519	FAM65A	0.391249	3.677162e-5	6.371419e-1	1.633697e-2
40	8164967	8139281	NM_013284	POLM	0.390866	3.748180e-5	6.494471e-1	1.623618e-2
41	8164967	8029193	NM_015125	CIC	0.390697	3.779714e-5	6.549110e-1	1.597344e-2
42	8164967	8143610	NM_005435	ARHGEF5	0.390383	3.839331e-5	6.652409e-1	1.583907e-2
43	8164967	8010918	NM_001128159	VPS53	0.388609	4.192425e-5	7.264214e-1	1.689352e-2
44	8164967	7903988	NM_001010935	RAP1A	-0.387942	4.332807e-5	7.507455e-1	1.706240e-2
45	8164967	8160521	NM_024761	MOBKL2B	0.387499	4.428528e-5	7.673310e-1	1.705180e-2
46	8164967	7985025	NM_175881	ODF3L1	0.385413	4.906377e-5	8.501280e-1	1.848104e-2
47	8164967	8026787	NM_173544	FAM129C	0.384921	5.025787e-5	8.708182e-1	1.852805e-2
48	8164967	8028286	NM_015073	SIPA1L3	0.384716	5.076503e-5	8.796056e-1	1.832512e-2
49	8164967	8002692	NM_006885	ZFHX3	0.383791	5.310601e-5	9.201678e-1	1.877893e-2
50	8164967	7958931	NM_004416	DTX1	0.383788	5.311548e-5	9.203319e-1	1.840664e-2

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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