[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
574	8012843	NM_144680	ZNF18		zinc finger protein 18

Fetching correlation data, please wait...
Getting list of correlations for id 574.
Getting list of p-values for id 574.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.125 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8012843	8053480	ENST00000362817		-0.583450	6.505433e-11	1.127196e-6	1.127196e-6
2	8012843	8102751	NM_144643	SCLT1	0.573126	1.666858e-10	2.888164e-6	1.444082e-6
3	8012843	8084219	NM_017644	KLHL24	0.568701	2.470085e-10	4.279916e-6	1.426639e-6
4	8012843	8073214	NM_001024843	TNRC6B	0.566900	2.894145e-10	5.014685e-6	1.253671e-6
5	8012843	8086810	NM_003074	SMARCC1	0.566810	2.917303e-10	5.054812e-6	1.010962e-6
6	8012843	7977105	NM_152307	TRMT61A	-0.565533	3.262196e-10	5.652407e-6	9.420679e-7
7	8012843	7993019	NM_032349	NUDT16L1	-0.562540	4.230787e-10	7.330685e-6	1.047241e-6
8	8012843	8068413	NM_001236	CBR3	-0.561370	4.679951e-10	8.108951e-6	1.013619e-6
9	8012843	8105191	NM_024615	PARP8	0.560275	5.142194e-10	8.909879e-6	9.899865e-7
10	8012843	8094520	NM_032456	PCDH7	-0.555735	7.568708e-10	1.311430e-5	1.311430e-6
11	8012843	8052024	NM_025133	FBXO11	0.555230	7.898857e-10	1.368635e-5	1.244214e-6
12	8012843	8150491	NM_001099412	MYST3	0.554876	8.138263e-10	1.410117e-5	1.175097e-6
13	8012843	8079021	NM_001904	CTNNB1	0.554476	8.416710e-10	1.458363e-5	1.121818e-6
14	8012843	7900009	NM_017629	EIF2C4	0.553197	9.371159e-10	1.623741e-5	1.159815e-6
15	8012843	7935834	NM_024895	PDZD7	-0.552723	9.750705e-10	1.689505e-5	1.126336e-6
16	8012843	8018502	NM_173547	TRIM65	-0.551850	1.048898e-9	1.817425e-5	1.135891e-6
17	8012843	8021113	NM_145055	C18orf25	0.551547	1.075733e-9	1.863923e-5	1.096425e-6
18	8012843	8148208	NM_144963	FAM91A1	0.551427	1.086493e-9	1.882566e-5	1.045870e-6
19	8012843	8104253	NM_033120	NKD2	-0.551012	1.124728e-9	1.948816e-5	1.025692e-6
20	8012843	8080685	NM_007159	SLMAP	0.549800	1.243786e-9	2.155107e-5	1.077554e-6
21	8012843	8064014	NM_022082	SLC17A9	-0.548822	1.348673e-9	2.336845e-5	1.112783e-6
22	8012843	8026217	NM_017721	CC2D1A	-0.548731	1.358873e-9	2.354520e-5	1.070236e-6
23	8012843	8156295	NM_024077	SECISBP2	0.547754	1.472844e-9	2.551997e-5	1.109564e-6
24	8012843	8007992	NM_002265	KPNB1	0.547594	1.492340e-9	2.585778e-5	1.077407e-6
25	8012843	7974621	NM_002892	ARID4A	0.547043	1.561471e-9	2.705560e-5	1.082224e-6
26	8012843	8028730	NM_182704	SELV	-0.545179	1.818955e-9	3.151704e-5	1.212194e-6
27	8012843	8054804	NM_019044	CCDC93	0.543735	2.045982e-9	3.545073e-5	1.312990e-6
28	8012843	7910638	ENST00000410639		-0.543262	2.126058e-9	3.683820e-5	1.315650e-6
29	8012843	8004867	NM_001025579	NDEL1	0.542275	2.303075e-9	3.990539e-5	1.376048e-6
30	8012843	7974090	NM_005930	CTAGE5	0.542154	2.325639e-9	4.029634e-5	1.343211e-6
31	8012843	8066031	NM_016558	SCAND1	-0.541833	2.386816e-9	4.135637e-5	1.334076e-6
32	8012843	8161745			-0.540814	2.591136e-9	4.489662e-5	1.403019e-6
33	8012843	8133809	NM_198467	RSBN1L	0.540628	2.630162e-9	4.557281e-5	1.380994e-6
34	8012843	8028583	NM_001014831	PAK4	-0.540097	2.744834e-9	4.755974e-5	1.398816e-6
35	8012843	8016429	ENST00000384576		0.539907	2.786828e-9	4.828738e-5	1.379639e-6
36	8012843	7965359	NM_001001323	ATP2B1	0.539672	2.840025e-9	4.920912e-5	1.366920e-6
37	8012843	8179617	NM_007028	TRIM31	-0.539008	2.995049e-9	5.189521e-5	1.402573e-6
38	8012843	7897890	NM_015378	VPS13D	0.537396	3.406115e-9	5.901776e-5	1.553099e-6
39	8012843	8113469	NM_014819	PJA2	0.537256	3.444217e-9	5.967795e-5	1.530204e-6
40	8012843	8092201	NM_024665	TBL1XR1	0.536565	3.638613e-9	6.304625e-5	1.576156e-6
41	8012843	7922646	NM_022347	TOR1AIP2	0.536292	3.718308e-9	6.442712e-5	1.571393e-6
42	8012843	8047419	NM_001228	CASP8	0.536003	3.804511e-9	6.592077e-5	1.569542e-6
43	8012843	8001748	NR_002980	SNORA50	0.534974	4.127085e-9	7.151000e-5	1.663023e-6
44	8012843	8077528	NM_001080517	SETD5	0.534703	4.216223e-9	7.305450e-5	1.660329e-6
45	8012843	7998542	NM_014714	IFT140	-0.533387	4.676355e-9	8.102720e-5	1.800604e-6
46	8012843	8063914	NM_178463	C20orf166	-0.533384	4.677723e-9	8.105090e-5	1.761976e-6
47	8012843	8042119	NM_022894	PAPOLG	0.533063	4.796903e-9	8.311593e-5	1.768424e-6
48	8012843	8042416	NM_014882	ARHGAP25	0.532569	4.986514e-9	8.640133e-5	1.800028e-6
49	8012843	8050190	NM_003183	ADAM17	0.530808	5.721522e-9	9.913681e-5	2.023200e-6
50	8012843	8153876	NM_025251	ARHGAP39	-0.530598	5.815919e-9	1.007724e-4	2.015448e-6

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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