[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
533	8134689	NM_145914	ZSCAN21		zinc finger and SCAN domain containing 21

Fetching correlation data, please wait...
Getting list of correlations for id 533.
Getting list of p-values for id 533.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.116 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8134689	7952179	NM_002105	H2AFX	0.538882	3.025410e-9	5.242128e-5	5.242128e-5
2	8134689	8024798	NM_018074	CCDC94	0.527277	7.521015e-9	1.303166e-4	6.515832e-5
3	8134689	8065427	NM_178311	GGTLC1	0.525089	8.896316e-9	1.541465e-4	5.138216e-5
4	8134689	8119444	NM_001012426	FOXP4	0.524658	9.194117e-9	1.593065e-4	3.982662e-5
5	8134689	8000948	NM_004765	BCL7C	0.522596	1.075614e-8	1.863716e-4	3.727433e-5
6	8134689	8053480	ENST00000362817		0.510053	2.732497e-8	4.734597e-4	7.890995e-5
7	8134689	8026051	NM_006397	RNASEH2A	0.509948	2.753563e-8	4.771099e-4	6.815855e-5
8	8134689	7950420	NM_001144869	LIPT2	0.500923	5.262573e-8	9.118460e-4	1.139807e-4
9	8134689	7918365	ENST00000384105		0.500002	5.616150e-8	9.731103e-4	1.081234e-4
10	8134689	7992255	NM_032520	GNPTG	0.491116	1.041846e-7	1.805207e-3	1.805207e-4
11	8134689	8172548	NM_015698	GPKOW	0.490782	1.065986e-7	1.847033e-3	1.679121e-4
12	8134689	8032761	NM_030662	MAP2K2	0.490636	1.076697e-7	1.865592e-3	1.554660e-4
13	8134689	7968252			0.490168	1.111707e-7	1.926255e-3	1.481735e-4
14	8134689	7966259	NM_016433	GLTP	0.489892	1.132907e-7	1.962988e-3	1.402134e-4
15	8134689	7994052	NM_006043	HS3ST2	0.489451	1.167540e-7	2.022996e-3	1.348664e-4
16	8134689	7991034	NM_199330	HOMER2	0.488626	1.235003e-7	2.139890e-3	1.337431e-4
17	8134689	8013919	NM_198147	ABHD15	0.487762	1.309659e-7	2.269246e-3	1.334850e-4
18	8134689	8051501	NM_002759	EIF2AK2	-0.487595	1.324518e-7	2.294992e-3	1.274996e-4
19	8134689	8093386	NM_002477	MYL5	0.486700	1.407316e-7	2.438456e-3	1.283398e-4
20	8134689	8019754	NM_207368	FAM195B	0.484742	1.605800e-7	2.782369e-3	1.391184e-4
21	8134689	8167040	NR_000041	RNU12-2P	0.483093	1.793433e-7	3.107481e-3	1.479753e-4
22	8134689	8068938	NM_003683	RRP1	0.482720	1.838633e-7	3.185800e-3	1.448091e-4
23	8134689	8165622	NM_138462	ZMYND19	0.482668	1.845051e-7	3.196920e-3	1.389965e-4
24	8134689	8010747	NM_212492	GPS1	0.481388	2.009183e-7	3.481311e-3	1.450546e-4
25	8134689	8074644	ENST00000411545		0.480665	2.107999e-7	3.652530e-3	1.461012e-4
26	8134689	8042558	NM_024933	ANKRD53	0.479414	2.289889e-7	3.967690e-3	1.526035e-4
27	8134689	7910414	ENST00000364622		0.477140	2.659721e-7	4.608499e-3	1.706852e-4
28	8134689	8094968	NM_175619	ZAR1	0.477089	2.668575e-7	4.623841e-3	1.651372e-4
29	8134689	8133221	ENST00000363319		0.476595	2.756272e-7	4.775793e-3	1.646825e-4
30	8134689	8003332	NM_002461	MVD	0.475949	2.875331e-7	4.982085e-3	1.660695e-4
31	8134689	8126646	NM_018135	MRPS18A	0.475729	2.916858e-7	5.054040e-3	1.630335e-4
32	8134689	8032076	NM_194460	RNF126	0.474125	3.237967e-7	5.610426e-3	1.753258e-4
33	8134689	8026915	NM_015683	ARRDC2	0.474125	3.238080e-7	5.610622e-3	1.700188e-4
34	8134689	7898902	NM_007260	LYPLA2	0.473753	3.317199e-7	5.747711e-3	1.690503e-4
35	8134689	8091039	NM_001013650	PRR23B	0.473021	3.478210e-7	6.026694e-3	1.721913e-4
36	8134689	8000917	NM_152458	ZNF785	0.472682	3.555442e-7	6.160515e-3	1.711254e-4
37	8134689	8059731	NM_002601	PDE6D	0.470783	4.018295e-7	6.962500e-3	1.881757e-4
38	8134689	8162472	NM_021570	BARX1	0.469970	4.233703e-7	7.335737e-3	1.930457e-4
39	8134689	8025868	NM_001080503	CCDC159	0.468678	4.598268e-7	7.967420e-3	2.042928e-4
40	8134689	7955578	NM_181711	GRASP	0.468669	4.600913e-7	7.972001e-3	1.993000e-4
41	8134689	8117165	NM_003107	SOX4	0.463655	6.320319e-7	1.095122e-2	2.671029e-4
42	8134689	8142821	NM_001135914	KCP	0.462982	6.593165e-7	1.142398e-2	2.719995e-4
43	8134689	8036473	NM_033256	PPP1R14A	0.462595	6.754934e-7	1.170427e-2	2.721924e-4
44	8134689	7998367	NM_058192	RPUSD1	0.462304	6.879304e-7	1.191977e-2	2.709039e-4
45	8134689	8024420	NM_007165	SF3A2	0.462070	6.980428e-7	1.209499e-2	2.687775e-4
46	8134689	7960407	NM_020996	FGF6	0.459910	7.986256e-7	1.383779e-2	3.008214e-4
47	8134689	8138757	NM_018951	HOXA10	0.459462	8.211092e-7	1.422736e-2	3.027098e-4
48	8134689	7969368	ENST00000365563		0.459153	8.369790e-7	1.450234e-2	3.021320e-4
49	8134689	7971915	AK127969	FLJ25694	0.458931	8.485802e-7	1.470335e-2	3.000683e-4
50	8134689	8137225	NM_013400	REPIN1	0.457917	9.034466e-7	1.565402e-2	3.130804e-4

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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