[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5761	8059731	NM_002601	PDE6D		phosphodiesterase 6D, cGMP-specific, rod, delta

Fetching correlation data, please wait...
Getting list of correlations for id 5761.
Getting list of p-values for id 5761.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.126 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8059731	8134689	NM_145914	ZSCAN21	0.470783	4.018295e-7	6.962500e-3	6.962500e-3
2	8059731	8024798	NM_018074	CCDC94	0.463808	6.260179e-7	1.084701e-2	5.423506e-3
3	8059731	8117598	NM_021968	HIST1H4J	0.456288	9.986764e-7	1.730407e-2	5.768022e-3
4	8059731	8166398	NM_206923	YY2	0.451841	1.309544e-6	2.269047e-2	5.672618e-3
5	8059731	8140707	ENST00000429273		0.446341	1.821498e-6	3.156110e-2	6.312220e-3
6	8059731	8022174			0.446263	1.830003e-6	3.170846e-2	5.284744e-3
7	8059731	8066258	NR_002911	SNORA71A	0.443328	2.177024e-6	3.772130e-2	5.388757e-3
8	8059731	7964658	ENST00000363426		0.440989	2.497332e-6	4.327127e-2	5.408909e-3
9	8059731	8121275	ENST00000363444		-0.435124	3.507676e-6	6.077749e-2	6.753055e-3
10	8059731	8052416			0.434674	3.599528e-6	6.236903e-2	6.236903e-3
11	8059731	8092931	ENST00000410893		0.434273	3.683053e-6	6.381626e-2	5.801479e-3
12	8059731	8106250	ENST00000410895		0.433548	3.838918e-6	6.651693e-2	5.543078e-3
13	8059731	8124521	NM_003541	HIST1H4K	0.433110	3.935989e-6	6.819889e-2	5.246068e-3
14	8059731	7960052	NR_002979	SNORA49	0.432725	4.023417e-6	6.971375e-2	4.979554e-3
15	8059731	8042558	NM_024933	ANKRD53	0.428569	5.089835e-6	8.819156e-2	5.879438e-3
16	8059731	8026051	NM_006397	RNASEH2A	0.426759	5.633207e-6	9.760658e-2	6.100411e-3
17	8059731	8056215	AK093576		0.423189	6.869425e-6	1.190265e-1	7.001561e-3
18	8059731	7936115	NM_014631	SH3PXD2A	0.421839	7.400382e-6	1.282264e-1	7.123690e-3
19	8059731	8116932	NM_030948	PHACTR1	0.421836	7.401555e-6	1.282467e-1	6.749828e-3
20	8059731	8082663	NR_027766	NUDT16P1	0.420667	7.892253e-6	1.367491e-1	6.837453e-3
21	8059731	7992854	NM_004220	ZNF213	0.420323	8.042197e-6	1.393472e-1	6.635579e-3
22	8059731	8007188	NM_033133	CNP	0.416200	1.006394e-5	1.743779e-1	7.926268e-3
23	8059731	7966257			0.413288	1.177043e-5	2.039463e-1	8.867230e-3
24	8059731	8003156	ENST00000364491		0.411502	1.294795e-5	2.243491e-1	9.347880e-3
25	8059731	8044961	NR_023343	RNU4ATAC	0.410586	1.359373e-5	2.355385e-1	9.421542e-3
26	8059731	7966259	NM_016433	GLTP	0.409676	1.426496e-5	2.471690e-1	9.506500e-3
27	8059731	8169634	ENST00000384446		0.408786	1.495235e-5	2.590793e-1	9.595530e-3
28	8059731	7940781	NM_201428	RTN3	-0.408211	1.541209e-5	2.670453e-1	9.537330e-3
29	8059731	8069633	NM_001003703	ATP5J	0.407785	1.576167e-5	2.731025e-1	9.417329e-3
30	8059731	8145529	ENST00000355177		-0.405744	1.754174e-5	3.039457e-1	1.013152e-2
31	8059731	8084219	NM_017644	KLHL24	-0.405093	1.814848e-5	3.144588e-1	1.014383e-2
32	8059731	7985786	NM_013227	ACAN	0.403328	1.989311e-5	3.446879e-1	1.077150e-2
33	8059731	8002470	NM_032821	HYDIN	0.403129	2.009911e-5	3.482572e-1	1.055325e-2
34	8059731	7911038	NM_205768	ZNF238	-0.402494	2.077063e-5	3.598926e-1	1.058508e-2
35	8059731	7948894	NR_002716	RNU2-1	0.402030	2.127472e-5	3.686270e-1	1.053220e-2
36	8059731	7899480	NR_002907	SNORA73A	0.401748	2.158693e-5	3.740368e-1	1.038991e-2
37	8059731	8030092	NR_004401	SEC1	0.401528	2.183380e-5	3.783143e-1	1.022471e-2
38	8059731	8026875	NR_000012	SNORA68	0.400707	2.277569e-5	3.946344e-1	1.038511e-2
39	8059731	8162744	NM_003389	CORO2A	0.399399	2.435768e-5	4.220455e-1	1.082168e-2
40	8059731	8158568	NM_006676	USP20	0.397353	2.703777e-5	4.684835e-1	1.171209e-2
41	8059731	8048075	ENST00000362715		0.397086	2.740822e-5	4.749022e-1	1.158298e-2
42	8059731	8006317	ENST00000411332		0.396650	2.802224e-5	4.855413e-1	1.156051e-2
43	8059731	8114843	ENST00000364553		0.395555	2.962044e-5	5.132333e-1	1.193566e-2
44	8059731	8078999	NM_175888	ZNF620	0.395276	3.004041e-5	5.205101e-1	1.182978e-2
45	8059731	7902203			0.394240	3.165231e-5	5.484396e-1	1.218755e-2
46	8059731	7987572			0.393011	3.366931e-5	5.833882e-1	1.268235e-2
47	8059731	8052024	NM_025133	FBXO11	-0.392563	3.443468e-5	5.966496e-1	1.269467e-2
48	8059731	8161024	NR_003051	RMRP	0.390378	3.840264e-5	6.654025e-1	1.386255e-2
49	8059731	7995417			0.389220	4.067553e-5	7.047849e-1	1.438337e-2
50	8059731	8134880	NM_023948	MOSPD3	0.389072	4.097372e-5	7.099516e-1	1.419903e-2

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation