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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
5411 8158568 NM_006676 USP20 link to infopage ubiquitin specific peptidase 20

Fetching correlation data, please wait...
Getting list of correlations for id 5411.
Getting list of p-values for id 5411.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.111 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8158568 8010212 NM_152468 TMC8 link to infopage 0.672547 3.944576e-15 6.834768e-11 6.834768e-11
2 8158568 8141425 NM_005641 TAF6 link to infopage 0.653381 4.192767e-14 7.264807e-10 3.632404e-10
3 8158568 8005994 NM_005702 ERAL1 link to infopage 0.650263 6.061603e-14 1.050294e-9 3.500980e-10
4 8158568 7994541 NM_014387 LAT link to infopage 0.647644 8.233352e-14 1.426593e-9 3.566482e-10
5 8158568 8026272 NM_004843 IL27RA link to infopage 0.642928 1.418795e-13 2.458347e-9 4.916694e-10
6 8158568 8025788 NM_001128849 SMARCA4 link to infopage 0.637164 2.724011e-13 4.719894e-9 7.866490e-10
7 8158568 8012197 NM_020360 PLSCR3 link to infopage 0.629581 6.294193e-13 1.090595e-8 1.557993e-9
8 8158568 8137874 NM_032415 CARD11 link to infopage 0.624301 1.112749e-12 1.928060e-8 2.410075e-9
9 8158568 8006788 NM_005937 MLLT6 link to infopage 0.624246 1.119277e-12 1.939371e-8 2.154857e-9
10 8158568 8029147 NM_199002 ARHGEF1 link to infopage 0.621730 1.462964e-12 2.534879e-8 2.534879e-9
11 8158568 8019376 NM_022156 DUS1L link to infopage 0.618839 1.984009e-12 3.437693e-8 3.125175e-9
12 8158568 8033207 NM_024898 DENND1C link to infopage 0.617883 2.192723e-12 3.799330e-8 3.166109e-9
13 8158568 8074003 NM_025204 TRABD link to infopage 0.616133 2.631127e-12 4.558954e-8 3.506888e-9
14 8158568 8076137 NM_015374 SUN2 link to infopage 0.613870 3.325100e-12 5.761401e-8 4.115286e-9
15 8158568 8118734 NM_002224 ITPR3 link to infopage 0.611736 4.139098e-12 7.171816e-8 4.781210e-9
16 8158568 8030339 NM_001459 FLT3LG link to infopage 0.609844 5.019696e-12 8.697627e-8 5.436017e-9
17 8158568 7968890 NM_003646 DGKZ link to infopage 0.608554 5.720276e-12 9.911523e-8 5.830307e-9
18 8158568 7996608 NM_001013838 RLTPR link to infopage 0.606015 7.386669e-12 1.279888e-7 7.110489e-9
19 8158568 8139468 NM_004749 TBRG4 link to infopage 0.605566 7.725949e-12 1.338675e-7 7.045659e-9
20 8158568 8012079 NM_004422 DVL2 link to infopage 0.604734 8.395994e-12 1.454774e-7 7.273869e-9
21 8158568 7941136 NM_013265 C11orf2 link to infopage 0.604275 8.789172e-12 1.522900e-7 7.251904e-9
22 8158568 7967202 NM_019034 RHOF link to infopage 0.602549 1.043254e-11 1.807646e-7 8.216574e-9
23 8158568 8159654 NM_015456 COBRA1 link to infopage 0.601289 1.181554e-11 2.047279e-7 8.901211e-9
24 8158568 8000869 NM_052838 SEPT1 link to infopage 0.596389 1.907540e-11 3.305195e-7 1.377165e-8
25 8158568 8071823 NM_012295 CABIN1 link to infopage 0.595214 2.137230e-11 3.703179e-7 1.481272e-8
26 8158568 8060675 NM_021873 CDC25B link to infopage 0.595106 2.159490e-11 3.741748e-7 1.439134e-8
27 8158568 8043725 NM_001079 ZAP70 link to infopage 0.592670 2.729162e-11 4.728819e-7 1.751415e-8
28 8158568 8068938 NM_003683 RRP1 link to infopage 0.590398 3.389359e-11 5.872743e-7 2.097408e-8
29 8158568 7906671 NM_001014443 USP21 link to infopage 0.589938 3.540419e-11 6.134484e-7 2.115339e-8
30 8158568 8175900 NM_001666 ARHGAP4 link to infopage 0.585861 5.197154e-11 9.005108e-7 3.001703e-8
31 8158568 8118682 NR_027692 PHF1 link to infopage 0.584652 5.817798e-11 1.008050e-6 3.251774e-8
32 8158568 7915659 NM_024602 HECTD3 link to infopage 0.584550 5.873052e-11 1.017624e-6 3.180074e-8
33 8158568 7956930 NM_006482 DYRK2 link to infopage 0.583037 6.759217e-11 1.171169e-6 3.548998e-8
34 8158568 7939595 NM_021117 CRY2 link to infopage 0.581221 7.992755e-11 1.384905e-6 4.073249e-8
35 8158568 8079563 NM_138615 DHX30 link to infopage 0.580060 8.892062e-11 1.540728e-6 4.402079e-8
36 8158568 8010848 NM_005993 TBCD link to infopage 0.577519 1.121405e-10 1.943059e-6 5.397386e-8
37 8158568 8076307 NM_002883 RANGAP1 link to infopage 0.577198 1.154573e-10 2.000528e-6 5.406832e-8
38 8158568 8071136 NM_001127649 PEX26 link to infopage 0.576691 1.208892e-10 2.094647e-6 5.512228e-8
39 8158568 8026564 NM_016270 KLF2 link to infopage 0.576391 1.242218e-10 2.152392e-6 5.518953e-8
40 8158568 8080320 NM_007184 NISCH link to infopage 0.575918 1.296523e-10 2.246486e-6 5.616215e-8
41 8158568 7945521 NM_182612 PDDC1 link to infopage 0.575688 1.323727e-10 2.293621e-6 5.594197e-8
42 8158568 8125172 NM_006709 EHMT2 link to infopage 0.574735 1.442513e-10 2.499442e-6 5.951051e-8
43 8158568 8179884 NM_006709 EHMT2 link to infopage 0.574735 1.442513e-10 2.499442e-6 5.812655e-8
44 8158568 8076176 NM_014292 CBX6 link to infopage 0.572290 1.796258e-10 3.112375e-6 7.073581e-8
45 8158568 8177824 NM_014046 MRPS18B link to infopage 0.571929 1.854984e-10 3.214130e-6 7.142512e-8
46 8158568 8117955 NM_014046 MRPS18B link to infopage 0.571929 1.854984e-10 3.214130e-6 6.987240e-8
47 8158568 8179139 NM_014046 MRPS18B link to infopage 0.571929 1.854984e-10 3.214130e-6 6.838575e-8
48 8158568 7911359 NM_015658 NOC2L link to infopage 0.570088 2.184895e-10 3.785767e-6 7.887015e-8
49 8158568 8005171 NM_016113 TRPV2 link to infopage 0.569293 2.344414e-10 4.062167e-6 8.290136e-8
50 8158568 8026915 NM_015683 ARRDC2 link to infopage 0.568272 2.565335e-10 4.444956e-6 8.889911e-8

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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